Alignment Stats
| Sequences analysed in total |
10113854 |
| Single-end alignments with a unique best hit |
4732904 |
| Sequences without alignments under any condition |
144592 |
| Sequences that did not map uniquely |
5236358 |
| Genomic sequence context not extractable (edges of chromosomes) |
3226 |
|
|
Cytosine Methylation
| Total C's analysed |
26664014 |
| Methylated C's in CpG context |
903842 |
| Methylated C's in CHG context |
107795 |
| Methylated C's in CHH context |
2867247 |
| Methylated C's in Unknown context |
50394 |
| Unmethylated C's in CpG context |
2225682 |
| Unmethylated C's in CHG context |
4168082 |
| Unmethylated C's in CHH context |
16391366 |
| Unmethylated C's in Unknown context |
86742 |
| Percentage methylation (CpG context) |
28.9% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
14.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
1852528 |
original top strand |
| CTOT |
513555 |
complementary to original top strand |
| CTOB |
515474 |
complementary to original bottom strand |
| OB |
1848121 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
4729678 |
| Unique alignments |
4214077 |
| Duplicates removed |
515601 |
| Duplicated alignments were found at 328557 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
23724495 |
| Methylated C's in CpG context |
785155 |
| Methylated C's in CHG context |
93231 |
| Methylated C's in CHH context |
2435091 |
| Unmethylated C's in CpG context |
1991364 |
| Unmethylated C's in CHG context |
3690612 |
| Unmethylated C's in CHH context |
14729042 |
| Percentage methylation (CpG context) |
28.3% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
