Alignment Stats
Sequences analysed in total |
12231319 |
Single-end alignments with a unique best hit |
5718874 |
Sequences without alignments under any condition |
184967 |
Sequences that did not map uniquely |
6327478 |
Genomic sequence context not extractable (edges of chromosomes) |
3958 |
|
|
Cytosine Methylation
Total C's analysed |
32455254 |
Methylated C's in CpG context |
1107493 |
Methylated C's in CHG context |
149103 |
Methylated C's in CHH context |
3559852 |
Methylated C's in Unknown context |
62167 |
Unmethylated C's in CpG context |
2805384 |
Unmethylated C's in CHG context |
5099491 |
Unmethylated C's in CHH context |
19733931 |
Unmethylated C's in Unknown context |
107662 |
Percentage methylation (CpG context) |
28.3% |
Percentage methylation (CHG context) |
2.8% |
Percentage methylation (CHH context) |
15.3% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
2232041 |
original top strand |
CTOT |
625277 |
complementary to original top strand |
CTOB |
627146 |
complementary to original bottom strand |
OB |
2230452 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
5714916 |
Unique alignments |
4934475 |
Duplicates removed |
780441 |
Duplicated alignments were found at 442111 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
27854315 |
Methylated C's in CpG context |
935861 |
Methylated C's in CHG context |
124388 |
Methylated C's in CHH context |
2873426 |
Unmethylated C's in CpG context |
2346339 |
Unmethylated C's in CHG context |
4353881 |
Unmethylated C's in CHH context |
17220420 |
Percentage methylation (CpG context) |
28.5% |
Percentage methylation (CHG context) |
N/A% |
Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot