Alignment Stats
Sequences analysed in total |
11555321 |
Single-end alignments with a unique best hit |
5436861 |
Sequences without alignments under any condition |
173630 |
Sequences that did not map uniquely |
5944830 |
Genomic sequence context not extractable (edges of chromosomes) |
3707 |
|
|
Cytosine Methylation
Total C's analysed |
30884657 |
Methylated C's in CpG context |
1070977 |
Methylated C's in CHG context |
141123 |
Methylated C's in CHH context |
3362649 |
Methylated C's in Unknown context |
59075 |
Unmethylated C's in CpG context |
2690299 |
Unmethylated C's in CHG context |
4839624 |
Unmethylated C's in CHH context |
18779985 |
Unmethylated C's in Unknown context |
102723 |
Percentage methylation (CpG context) |
28.5% |
Percentage methylation (CHG context) |
2.8% |
Percentage methylation (CHH context) |
15.2% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
2126775 |
original top strand |
CTOT |
592511 |
complementary to original top strand |
CTOB |
594260 |
complementary to original bottom strand |
OB |
2119608 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
5433154 |
Unique alignments |
4686287 |
Duplicates removed |
746867 |
Duplicated alignments were found at 396789 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
26424291 |
Methylated C's in CpG context |
908872 |
Methylated C's in CHG context |
109325 |
Methylated C's in CHH context |
2698694 |
Unmethylated C's in CpG context |
2196441 |
Unmethylated C's in CHG context |
4131710 |
Unmethylated C's in CHH context |
16379249 |
Percentage methylation (CpG context) |
29.3% |
Percentage methylation (CHG context) |
N/A% |
Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot