Alignment Stats
Sequences analysed in total |
11654467 |
Single-end alignments with a unique best hit |
5433833 |
Sequences without alignments under any condition |
191064 |
Sequences that did not map uniquely |
6029570 |
Genomic sequence context not extractable (edges of chromosomes) |
3794 |
|
|
Cytosine Methylation
Total C's analysed |
30793506 |
Methylated C's in CpG context |
1054675 |
Methylated C's in CHG context |
176932 |
Methylated C's in CHH context |
3415378 |
Methylated C's in Unknown context |
57018 |
Unmethylated C's in CpG context |
2614904 |
Unmethylated C's in CHG context |
4783710 |
Unmethylated C's in CHH context |
18747907 |
Unmethylated C's in Unknown context |
99509 |
Percentage methylation (CpG context) |
28.7% |
Percentage methylation (CHG context) |
3.6% |
Percentage methylation (CHH context) |
15.4% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
2119792 |
original top strand |
CTOT |
596380 |
complementary to original top strand |
CTOB |
598303 |
complementary to original bottom strand |
OB |
2115564 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
5430039 |
Unique alignments |
4722183 |
Duplicates removed |
707856 |
Duplicated alignments were found at 427792 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
26662705 |
Methylated C's in CpG context |
901196 |
Methylated C's in CHG context |
150502 |
Methylated C's in CHH context |
2806928 |
Unmethylated C's in CpG context |
2236119 |
Unmethylated C's in CHG context |
4126765 |
Unmethylated C's in CHH context |
16441195 |
Percentage methylation (CpG context) |
28.7% |
Percentage methylation (CHG context) |
N/A% |
Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot