Alignment Stats
Sequences analysed in total |
9246318 |
Single-end alignments with a unique best hit |
4354977 |
Sequences without alignments under any condition |
137109 |
Sequences that did not map uniquely |
4754232 |
Genomic sequence context not extractable (edges of chromosomes) |
3055 |
|
|
Cytosine Methylation
Total C's analysed |
24632437 |
Methylated C's in CpG context |
867950 |
Methylated C's in CHG context |
113827 |
Methylated C's in CHH context |
2657818 |
Methylated C's in Unknown context |
46268 |
Unmethylated C's in CpG context |
2076267 |
Unmethylated C's in CHG context |
3866565 |
Unmethylated C's in CHH context |
15050010 |
Unmethylated C's in Unknown context |
80746 |
Percentage methylation (CpG context) |
29.5% |
Percentage methylation (CHG context) |
2.9% |
Percentage methylation (CHH context) |
15.0% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
1705631 |
original top strand |
CTOT |
469284 |
complementary to original top strand |
CTOB |
472270 |
complementary to original bottom strand |
OB |
1704737 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
4351922 |
Unique alignments |
3838635 |
Duplicates removed |
513287 |
Duplicated alignments were found at 309988 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
21669035 |
Methylated C's in CpG context |
747767 |
Methylated C's in CHG context |
92651 |
Methylated C's in CHH context |
2215781 |
Unmethylated C's in CpG context |
1808397 |
Unmethylated C's in CHG context |
3389071 |
Unmethylated C's in CHH context |
13415368 |
Percentage methylation (CpG context) |
29.3% |
Percentage methylation (CHG context) |
N/A% |
Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot