Alignment Stats
| Sequences analysed in total |
92334932 |
| Single-end alignments with a unique best hit |
40417426 |
| Sequences without alignments under any condition |
11929375 |
| Sequences that did not map uniquely |
39988131 |
| Genomic sequence context not extractable (edges of chromosomes) |
37499 |
|
|
Cytosine Methylation
| Total C's analysed |
217529869 |
| Methylated C's in CpG context |
8289193 |
| Methylated C's in CHG context |
521677 |
| Methylated C's in CHH context |
2297463 |
| Methylated C's in Unknown context |
31624 |
| Unmethylated C's in CpG context |
24139397 |
| Unmethylated C's in CHG context |
42918302 |
| Unmethylated C's in CHH context |
139363837 |
| Unmethylated C's in Unknown context |
541613 |
| Percentage methylation (CpG context) |
25.6% |
| Percentage methylation (CHG context) |
1.2% |
| Percentage methylation (CHH context) |
1.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
20219240 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
20160687 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
40379927 |
| Unique alignments |
28573677 |
| Duplicates removed |
11806250 |
| Duplicated alignments were found at 5277569 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
154138678 |
| Methylated C's in CpG context |
5284600 |
| Methylated C's in CHG context |
343750 |
| Methylated C's in CHH context |
1627489 |
| Unmethylated C's in CpG context |
16537973 |
| Unmethylated C's in CHG context |
29141338 |
| Unmethylated C's in CHH context |
101203528 |
| Percentage methylation (CpG context) |
24.2% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
