Alignment Stats
| Sequences analysed in total |
92334932 |
| Single-end alignments with a unique best hit |
43226506 |
| Sequences without alignments under any condition |
1408355 |
| Sequences that did not map uniquely |
47700071 |
| Genomic sequence context not extractable (edges of chromosomes) |
29930 |
|
|
Cytosine Methylation
| Total C's analysed |
244706621 |
| Methylated C's in CpG context |
8302900 |
| Methylated C's in CHG context |
1148320 |
| Methylated C's in CHH context |
26772276 |
| Methylated C's in Unknown context |
465478 |
| Unmethylated C's in CpG context |
20955820 |
| Unmethylated C's in CHG context |
38244673 |
| Unmethylated C's in CHH context |
149282632 |
| Unmethylated C's in Unknown context |
808211 |
| Percentage methylation (CpG context) |
28.4% |
| Percentage methylation (CHG context) |
2.9% |
| Percentage methylation (CHH context) |
15.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
16867827 |
original top strand |
| CTOT |
4733711 |
complementary to original top strand |
| CTOB |
4746933 |
complementary to original bottom strand |
| OB |
16848105 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
43196576 |
| Unique alignments |
30566851 |
| Duplicates removed |
12629725 |
| Duplicated alignments were found at 5862400 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
171722801 |
| Methylated C's in CpG context |
5436165 |
| Methylated C's in CHG context |
783128 |
| Methylated C's in CHH context |
16578021 |
| Unmethylated C's in CpG context |
14720586 |
| Unmethylated C's in CHG context |
26603527 |
| Unmethylated C's in CHH context |
107601374 |
| Percentage methylation (CpG context) |
27.0% |
| Percentage methylation (CHG context) |
2.9% |
| Percentage methylation (CHH context) |
13.4% |
|
|
M-Bias Plot
|
