Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60757 |
| Pairs without alignments under any condition |
21589 |
| Pairs that did not map uniquely |
17654 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2120011 |
| Methylated C's in CpG context |
30085 |
| Methylated C's in CHG context |
1759 |
| Methylated C's in CHH context |
7647 |
| Methylated C's in Unknown context |
80 |
| Unmethylated C's in CpG context |
246978 |
| Unmethylated C's in CHG context |
370481 |
| Unmethylated C's in CHH context |
1463061 |
| Unmethylated C's in Unknown context |
4956 |
| Percentage methylation (CpG context) |
10.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15319 |
original top strand |
| CTOT |
14927 |
complementary to original top strand |
| CTOB |
15269 |
complementary to original bottom strand |
| OB |
15242 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60757 |
| Unique alignments |
56393 |
| Duplicates removed |
4364 |
| Duplicated alignments were found at 4061 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1289022 |
| Methylated C's in CpG context |
17731 |
| Methylated C's in CHG context |
1087 |
| Methylated C's in CHH context |
4608 |
| Unmethylated C's in CpG context |
148754 |
| Unmethylated C's in CHG context |
223139 |
| Unmethylated C's in CHH context |
893703 |
| Percentage methylation (CpG context) |
10.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
