Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60320 |
| Pairs without alignments under any condition |
23556 |
| Pairs that did not map uniquely |
16124 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2133451 |
| Methylated C's in CpG context |
28548 |
| Methylated C's in CHG context |
1785 |
| Methylated C's in CHH context |
7249 |
| Methylated C's in Unknown context |
57 |
| Unmethylated C's in CpG context |
245609 |
| Unmethylated C's in CHG context |
367100 |
| Unmethylated C's in CHH context |
1483160 |
| Unmethylated C's in Unknown context |
5320 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15104 |
original top strand |
| CTOT |
14956 |
complementary to original top strand |
| CTOB |
15142 |
complementary to original bottom strand |
| OB |
15118 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60320 |
| Unique alignments |
56845 |
| Duplicates removed |
3475 |
| Duplicated alignments were found at 3290 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1385784 |
| Methylated C's in CpG context |
18157 |
| Methylated C's in CHG context |
1148 |
| Methylated C's in CHH context |
4695 |
| Unmethylated C's in CpG context |
158602 |
| Unmethylated C's in CHG context |
236768 |
| Unmethylated C's in CHH context |
966414 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
