Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61139 |
| Pairs without alignments under any condition |
22559 |
| Pairs that did not map uniquely |
16302 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2170069 |
| Methylated C's in CpG context |
28450 |
| Methylated C's in CHG context |
1869 |
| Methylated C's in CHH context |
7456 |
| Methylated C's in Unknown context |
74 |
| Unmethylated C's in CpG context |
249726 |
| Unmethylated C's in CHG context |
375412 |
| Unmethylated C's in CHH context |
1507156 |
| Unmethylated C's in Unknown context |
5335 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15216 |
original top strand |
| CTOT |
15406 |
complementary to original top strand |
| CTOB |
15321 |
complementary to original bottom strand |
| OB |
15196 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61139 |
| Unique alignments |
57320 |
| Duplicates removed |
3819 |
| Duplicated alignments were found at 3578 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1397855 |
| Methylated C's in CpG context |
17726 |
| Methylated C's in CHG context |
1184 |
| Methylated C's in CHH context |
4779 |
| Unmethylated C's in CpG context |
159944 |
| Unmethylated C's in CHG context |
239762 |
| Unmethylated C's in CHH context |
974460 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
