Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61001 |
| Pairs without alignments under any condition |
22625 |
| Pairs that did not map uniquely |
16374 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2155823 |
| Methylated C's in CpG context |
28443 |
| Methylated C's in CHG context |
1706 |
| Methylated C's in CHH context |
6933 |
| Methylated C's in Unknown context |
89 |
| Unmethylated C's in CpG context |
247462 |
| Unmethylated C's in CHG context |
369756 |
| Unmethylated C's in CHH context |
1501523 |
| Unmethylated C's in Unknown context |
5203 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15211 |
original top strand |
| CTOT |
15263 |
complementary to original top strand |
| CTOB |
15204 |
complementary to original bottom strand |
| OB |
15323 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61001 |
| Unique alignments |
56883 |
| Duplicates removed |
4118 |
| Duplicated alignments were found at 3871 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1373862 |
| Methylated C's in CpG context |
17554 |
| Methylated C's in CHG context |
1064 |
| Methylated C's in CHH context |
4411 |
| Unmethylated C's in CpG context |
156232 |
| Unmethylated C's in CHG context |
233363 |
| Unmethylated C's in CHH context |
961238 |
| Percentage methylation (CpG context) |
10.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
