Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60870 |
| Pairs without alignments under any condition |
22616 |
| Pairs that did not map uniquely |
16514 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2151592 |
| Methylated C's in CpG context |
28625 |
| Methylated C's in CHG context |
1778 |
| Methylated C's in CHH context |
7188 |
| Methylated C's in Unknown context |
63 |
| Unmethylated C's in CpG context |
250192 |
| Unmethylated C's in CHG context |
372662 |
| Unmethylated C's in CHH context |
1491147 |
| Unmethylated C's in Unknown context |
5347 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15284 |
original top strand |
| CTOT |
15322 |
complementary to original top strand |
| CTOB |
15195 |
complementary to original bottom strand |
| OB |
15069 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60870 |
| Unique alignments |
57222 |
| Duplicates removed |
3648 |
| Duplicated alignments were found at 3414 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1388599 |
| Methylated C's in CpG context |
17982 |
| Methylated C's in CHG context |
1129 |
| Methylated C's in CHH context |
4596 |
| Unmethylated C's in CpG context |
160404 |
| Unmethylated C's in CHG context |
238481 |
| Unmethylated C's in CHH context |
966007 |
| Percentage methylation (CpG context) |
10.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
