Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61099 |
| Pairs without alignments under any condition |
21844 |
| Pairs that did not map uniquely |
17057 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2149766 |
| Methylated C's in CpG context |
28319 |
| Methylated C's in CHG context |
1908 |
| Methylated C's in CHH context |
7403 |
| Methylated C's in Unknown context |
43 |
| Unmethylated C's in CpG context |
252710 |
| Unmethylated C's in CHG context |
375553 |
| Unmethylated C's in CHH context |
1483873 |
| Unmethylated C's in Unknown context |
5247 |
| Percentage methylation (CpG context) |
10.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15266 |
original top strand |
| CTOT |
15111 |
complementary to original top strand |
| CTOB |
15014 |
complementary to original bottom strand |
| OB |
15708 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61099 |
| Unique alignments |
57018 |
| Duplicates removed |
4081 |
| Duplicated alignments were found at 3824 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1359016 |
| Methylated C's in CpG context |
17577 |
| Methylated C's in CHG context |
1190 |
| Methylated C's in CHH context |
4695 |
| Unmethylated C's in CpG context |
158275 |
| Unmethylated C's in CHG context |
234950 |
| Unmethylated C's in CHH context |
942329 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
