Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
62198 |
| Pairs without alignments under any condition |
21145 |
| Pairs that did not map uniquely |
16657 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2196915 |
| Methylated C's in CpG context |
26894 |
| Methylated C's in CHG context |
1757 |
| Methylated C's in CHH context |
6890 |
| Methylated C's in Unknown context |
64 |
| Unmethylated C's in CpG context |
260090 |
| Unmethylated C's in CHG context |
385093 |
| Unmethylated C's in CHH context |
1516191 |
| Unmethylated C's in Unknown context |
5477 |
| Percentage methylation (CpG context) |
9.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15499 |
original top strand |
| CTOT |
15602 |
complementary to original top strand |
| CTOB |
15419 |
complementary to original bottom strand |
| OB |
15678 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
62198 |
| Unique alignments |
58103 |
| Duplicates removed |
4095 |
| Duplicated alignments were found at 3834 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1376985 |
| Methylated C's in CpG context |
16501 |
| Methylated C's in CHG context |
1093 |
| Methylated C's in CHH context |
4349 |
| Unmethylated C's in CpG context |
161661 |
| Unmethylated C's in CHG context |
239101 |
| Unmethylated C's in CHH context |
954280 |
| Percentage methylation (CpG context) |
9.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
