Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61076 |
| Pairs without alignments under any condition |
22233 |
| Pairs that did not map uniquely |
16691 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2148194 |
| Methylated C's in CpG context |
27784 |
| Methylated C's in CHG context |
1793 |
| Methylated C's in CHH context |
7536 |
| Methylated C's in Unknown context |
53 |
| Unmethylated C's in CpG context |
250625 |
| Unmethylated C's in CHG context |
372639 |
| Unmethylated C's in CHH context |
1487817 |
| Unmethylated C's in Unknown context |
5360 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
14959 |
original top strand |
| CTOT |
15367 |
complementary to original top strand |
| CTOB |
15363 |
complementary to original bottom strand |
| OB |
15387 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61076 |
| Unique alignments |
57474 |
| Duplicates removed |
3602 |
| Duplicated alignments were found at 3417 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1391794 |
| Methylated C's in CpG context |
17618 |
| Methylated C's in CHG context |
1166 |
| Methylated C's in CHH context |
4835 |
| Unmethylated C's in CpG context |
160667 |
| Unmethylated C's in CHG context |
239818 |
| Unmethylated C's in CHH context |
967690 |
| Percentage methylation (CpG context) |
9.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
