zrtg3644_17_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 57253 lines in total Total number of methylation call strings processed: 114506 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1386305 Total methylated C's in CpG context: 18302 Total methylated C's in CHG context: 1206 Total methylated C's in CHH context: 4800 Total C to T conversions in CpG context: 164021 Total C to T conversions in CHG context: 241401 Total C to T conversions in CHH context: 956575 C methylated in CpG context: 10.0% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%