Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61417 |
| Pairs without alignments under any condition |
21411 |
| Pairs that did not map uniquely |
17172 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2145277 |
| Methylated C's in CpG context |
29412 |
| Methylated C's in CHG context |
1874 |
| Methylated C's in CHH context |
7534 |
| Methylated C's in Unknown context |
72 |
| Unmethylated C's in CpG context |
251689 |
| Unmethylated C's in CHG context |
374150 |
| Unmethylated C's in CHH context |
1480618 |
| Unmethylated C's in Unknown context |
5061 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15314 |
original top strand |
| CTOT |
15456 |
complementary to original top strand |
| CTOB |
15634 |
complementary to original bottom strand |
| OB |
15013 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61417 |
| Unique alignments |
57099 |
| Duplicates removed |
4318 |
| Duplicated alignments were found at 4050 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1317943 |
| Methylated C's in CpG context |
17557 |
| Methylated C's in CHG context |
1110 |
| Methylated C's in CHH context |
4582 |
| Unmethylated C's in CpG context |
153340 |
| Unmethylated C's in CHG context |
227936 |
| Unmethylated C's in CHH context |
913418 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
