Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61819 |
| Pairs without alignments under any condition |
22067 |
| Pairs that did not map uniquely |
16114 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
2175796 |
| Methylated C's in CpG context |
32848 |
| Methylated C's in CHG context |
1890 |
| Methylated C's in CHH context |
7753 |
| Methylated C's in Unknown context |
82 |
| Unmethylated C's in CpG context |
247090 |
| Unmethylated C's in CHG context |
376369 |
| Unmethylated C's in CHH context |
1509846 |
| Unmethylated C's in Unknown context |
5246 |
| Percentage methylation (CpG context) |
11.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15417 |
original top strand |
| CTOT |
15428 |
complementary to original top strand |
| CTOB |
15748 |
complementary to original bottom strand |
| OB |
15225 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61818 |
| Unique alignments |
57792 |
| Duplicates removed |
4026 |
| Duplicated alignments were found at 3759 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1394909 |
| Methylated C's in CpG context |
20582 |
| Methylated C's in CHG context |
1188 |
| Methylated C's in CHH context |
4964 |
| Unmethylated C's in CpG context |
157518 |
| Unmethylated C's in CHG context |
239212 |
| Unmethylated C's in CHH context |
971445 |
| Percentage methylation (CpG context) |
11.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
