zrtg3644_13_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 57093 lines in total Total number of methylation call strings processed: 114186 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1407110 Total methylated C's in CpG context: 18235 Total methylated C's in CHG context: 1159 Total methylated C's in CHH context: 4777 Total C to T conversions in CpG context: 161556 Total C to T conversions in CHG context: 241902 Total C to T conversions in CHH context: 979481 C methylated in CpG context: 10.1% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%