zrtg3644_12_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 57357 lines in total Total number of methylation call strings processed: 114714 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1359316 Total methylated C's in CpG context: 16319 Total methylated C's in CHG context: 1018 Total methylated C's in CHH context: 4474 Total C to T conversions in CpG context: 153209 Total C to T conversions in CHG context: 226939 Total C to T conversions in CHH context: 957357 C methylated in CpG context: 9.6% C methylated in CHG context: 0.4% C methylated in CHH context: 0.5%