Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60730 |
| Pairs without alignments under any condition |
22750 |
| Pairs that did not map uniquely |
16520 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2144414 |
| Methylated C's in CpG context |
28604 |
| Methylated C's in CHG context |
1743 |
| Methylated C's in CHH context |
7591 |
| Methylated C's in Unknown context |
74 |
| Unmethylated C's in CpG context |
251327 |
| Unmethylated C's in CHG context |
375324 |
| Unmethylated C's in CHH context |
1479825 |
| Unmethylated C's in Unknown context |
5350 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15196 |
original top strand |
| CTOT |
15134 |
complementary to original top strand |
| CTOB |
15334 |
complementary to original bottom strand |
| OB |
15066 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60730 |
| Unique alignments |
56685 |
| Duplicates removed |
4045 |
| Duplicated alignments were found at 3763 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1361369 |
| Methylated C's in CpG context |
17748 |
| Methylated C's in CHG context |
1093 |
| Methylated C's in CHH context |
4739 |
| Unmethylated C's in CpG context |
158161 |
| Unmethylated C's in CHG context |
235802 |
| Unmethylated C's in CHH context |
943826 |
| Percentage methylation (CpG context) |
10.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
