zrtg3644_10_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 56946 lines in total Total number of methylation call strings processed: 113892 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1371132 Total methylated C's in CpG context: 18394 Total methylated C's in CHG context: 1125 Total methylated C's in CHH context: 4852 Total C to T conversions in CpG context: 159797 Total C to T conversions in CHG context: 237123 Total C to T conversions in CHH context: 949841 C methylated in CpG context: 10.3% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%