Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60927 |
| Pairs without alignments under any condition |
22647 |
| Pairs that did not map uniquely |
16426 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
2156193 |
| Methylated C's in CpG context |
29771 |
| Methylated C's in CHG context |
1786 |
| Methylated C's in CHH context |
7551 |
| Methylated C's in Unknown context |
68 |
| Unmethylated C's in CpG context |
252863 |
| Unmethylated C's in CHG context |
376521 |
| Unmethylated C's in CHH context |
1487701 |
| Unmethylated C's in Unknown context |
5259 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15178 |
original top strand |
| CTOT |
15142 |
complementary to original top strand |
| CTOB |
15261 |
complementary to original bottom strand |
| OB |
15345 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60926 |
| Unique alignments |
56946 |
| Duplicates removed |
3980 |
| Duplicated alignments were found at 3685 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1371132 |
| Methylated C's in CpG context |
18394 |
| Methylated C's in CHG context |
1125 |
| Methylated C's in CHH context |
4852 |
| Unmethylated C's in CpG context |
159797 |
| Unmethylated C's in CHG context |
237123 |
| Unmethylated C's in CHH context |
949841 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
