zrtg3616_8_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 53992 lines in total Total number of methylation call strings processed: 107984 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1057836 Total methylated C's in CpG context: 15560 Total methylated C's in CHG context: 953 Total methylated C's in CHH context: 4356 Total C to T conversions in CpG context: 128008 Total C to T conversions in CHG context: 189631 Total C to T conversions in CHH context: 719328 C methylated in CpG context: 10.8% C methylated in CHG context: 0.5% C methylated in CHH context: 0.6%