Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61458 |
| Pairs without alignments under any condition |
18881 |
| Pairs that did not map uniquely |
19661 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2027999 |
| Methylated C's in CpG context |
30597 |
| Methylated C's in CHG context |
1889 |
| Methylated C's in CHH context |
8508 |
| Methylated C's in Unknown context |
101 |
| Unmethylated C's in CpG context |
247291 |
| Unmethylated C's in CHG context |
367521 |
| Unmethylated C's in CHH context |
1372193 |
| Unmethylated C's in Unknown context |
4708 |
| Percentage methylation (CpG context) |
11.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15324 |
original top strand |
| CTOT |
15381 |
complementary to original top strand |
| CTOB |
15359 |
complementary to original bottom strand |
| OB |
15394 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61458 |
| Unique alignments |
53992 |
| Duplicates removed |
7466 |
| Duplicated alignments were found at 6463 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1057836 |
| Methylated C's in CpG context |
15560 |
| Methylated C's in CHG context |
953 |
| Methylated C's in CHH context |
4356 |
| Unmethylated C's in CpG context |
128008 |
| Unmethylated C's in CHG context |
189631 |
| Unmethylated C's in CHH context |
719328 |
| Percentage methylation (CpG context) |
10.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.6% |
|
|
M-Bias Plot
