Alignment Stats
Sequence pairs analysed in total |
100000 |
Paired-end alignments with a unique best hit |
61511 |
Pairs without alignments under any condition |
18449 |
Pairs that did not map uniquely |
20040 |
Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
Total C's analysed |
1971949 |
Methylated C's in CpG context |
28429 |
Methylated C's in CHG context |
1717 |
Methylated C's in CHH context |
7390 |
Methylated C's in Unknown context |
66 |
Unmethylated C's in CpG context |
240998 |
Unmethylated C's in CHG context |
356005 |
Unmethylated C's in CHH context |
1337410 |
Unmethylated C's in Unknown context |
4474 |
Percentage methylation (CpG context) |
10.6% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
15399 |
original top strand |
CTOT |
15229 |
complementary to original top strand |
CTOB |
15379 |
complementary to original bottom strand |
OB |
15504 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
61511 |
Unique alignments |
52888 |
Duplicates removed |
8623 |
Duplicated alignments were found at 7254 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
978778 |
Methylated C's in CpG context |
13835 |
Methylated C's in CHG context |
837 |
Methylated C's in CHH context |
3682 |
Unmethylated C's in CpG context |
118881 |
Unmethylated C's in CHG context |
175160 |
Unmethylated C's in CHH context |
666383 |
Percentage methylation (CpG context) |
10.4% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot