Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61653 |
| Pairs without alignments under any condition |
18849 |
| Pairs that did not map uniquely |
19498 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2033622 |
| Methylated C's in CpG context |
29878 |
| Methylated C's in CHG context |
1920 |
| Methylated C's in CHH context |
7954 |
| Methylated C's in Unknown context |
72 |
| Unmethylated C's in CpG context |
247745 |
| Unmethylated C's in CHG context |
368893 |
| Unmethylated C's in CHH context |
1377232 |
| Unmethylated C's in Unknown context |
4794 |
| Percentage methylation (CpG context) |
10.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15417 |
original top strand |
| CTOT |
15210 |
complementary to original top strand |
| CTOB |
15469 |
complementary to original bottom strand |
| OB |
15557 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61653 |
| Unique alignments |
53932 |
| Duplicates removed |
7721 |
| Duplicated alignments were found at 6649 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1054411 |
| Methylated C's in CpG context |
15340 |
| Methylated C's in CHG context |
965 |
| Methylated C's in CHH context |
4152 |
| Unmethylated C's in CpG context |
127416 |
| Unmethylated C's in CHG context |
189571 |
| Unmethylated C's in CHH context |
716967 |
| Percentage methylation (CpG context) |
10.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.6% |
|
|
M-Bias Plot
