Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61506 |
| Pairs without alignments under any condition |
18728 |
| Pairs that did not map uniquely |
19766 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
1975265 |
| Methylated C's in CpG context |
29898 |
| Methylated C's in CHG context |
1808 |
| Methylated C's in CHH context |
7634 |
| Methylated C's in Unknown context |
63 |
| Unmethylated C's in CpG context |
236799 |
| Unmethylated C's in CHG context |
355129 |
| Unmethylated C's in CHH context |
1343997 |
| Unmethylated C's in Unknown context |
4788 |
| Percentage methylation (CpG context) |
11.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15466 |
original top strand |
| CTOT |
15481 |
complementary to original top strand |
| CTOB |
15358 |
complementary to original bottom strand |
| OB |
15201 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61506 |
| Unique alignments |
53738 |
| Duplicates removed |
7768 |
| Duplicated alignments were found at 6710 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
999365 |
| Methylated C's in CpG context |
14715 |
| Methylated C's in CHG context |
901 |
| Methylated C's in CHH context |
3908 |
| Unmethylated C's in CpG context |
119091 |
| Unmethylated C's in CHG context |
177915 |
| Unmethylated C's in CHH context |
682835 |
| Percentage methylation (CpG context) |
11.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.6% |
|
|
M-Bias Plot
