zrtg3616_2_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 54090 lines in total Total number of methylation call strings processed: 108180 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1094017 Total methylated C's in CpG context: 15537 Total methylated C's in CHG context: 972 Total methylated C's in CHH context: 4051 Total C to T conversions in CpG context: 133072 Total C to T conversions in CHG context: 195204 Total C to T conversions in CHH context: 745181 C methylated in CpG context: 10.5% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%