Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61847 |
| Pairs without alignments under any condition |
19291 |
| Pairs that did not map uniquely |
18862 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2080161 |
| Methylated C's in CpG context |
30602 |
| Methylated C's in CHG context |
1923 |
| Methylated C's in CHH context |
7653 |
| Methylated C's in Unknown context |
76 |
| Unmethylated C's in CpG context |
255192 |
| Unmethylated C's in CHG context |
374869 |
| Unmethylated C's in CHH context |
1409922 |
| Unmethylated C's in Unknown context |
4821 |
| Percentage methylation (CpG context) |
10.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15384 |
original top strand |
| CTOT |
15310 |
complementary to original top strand |
| CTOB |
15418 |
complementary to original bottom strand |
| OB |
15735 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61847 |
| Unique alignments |
54090 |
| Duplicates removed |
7757 |
| Duplicated alignments were found at 6637 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1094017 |
| Methylated C's in CpG context |
15537 |
| Methylated C's in CHG context |
972 |
| Methylated C's in CHH context |
4051 |
| Unmethylated C's in CpG context |
133072 |
| Unmethylated C's in CHG context |
195204 |
| Unmethylated C's in CHH context |
745181 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
