zr3644_9_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 56719 lines in total Total number of methylation call strings processed: 113438 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1283697 Total methylated C's in CpG context: 17534 Total methylated C's in CHG context: 1072 Total methylated C's in CHH context: 4784 Total C to T conversions in CpG context: 147837 Total C to T conversions in CHG context: 221612 Total C to T conversions in CHH context: 890858 C methylated in CpG context: 10.6% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%