zr3644_8_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 57359 lines in total Total number of methylation call strings processed: 114718 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1371764 Total methylated C's in CpG context: 17946 Total methylated C's in CHG context: 1112 Total methylated C's in CHH context: 5133 Total C to T conversions in CpG context: 158229 Total C to T conversions in CHG context: 236164 Total C to T conversions in CHH context: 953180 C methylated in CpG context: 10.2% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%