zr3644_6_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 57974 lines in total Total number of methylation call strings processed: 115948 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1393231 Total methylated C's in CpG context: 17907 Total methylated C's in CHG context: 1145 Total methylated C's in CHH context: 4957 Total C to T conversions in CpG context: 159814 Total C to T conversions in CHG context: 237802 Total C to T conversions in CHH context: 971606 C methylated in CpG context: 10.1% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%