zr3644_24_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 58133 lines in total Total number of methylation call strings processed: 116266 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1405268 Total methylated C's in CpG context: 18046 Total methylated C's in CHG context: 1163 Total methylated C's in CHH context: 4781 Total C to T conversions in CpG context: 163678 Total C to T conversions in CHG context: 242659 Total C to T conversions in CHH context: 974941 C methylated in CpG context: 9.9% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%