Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61402 |
| Pairs without alignments under any condition |
21445 |
| Pairs that did not map uniquely |
17153 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2151706 |
| Methylated C's in CpG context |
27843 |
| Methylated C's in CHG context |
1773 |
| Methylated C's in CHH context |
7762 |
| Methylated C's in Unknown context |
53 |
| Unmethylated C's in CpG context |
250344 |
| Unmethylated C's in CHG context |
372609 |
| Unmethylated C's in CHH context |
1491375 |
| Unmethylated C's in Unknown context |
5466 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15058 |
original top strand |
| CTOT |
15440 |
complementary to original top strand |
| CTOB |
15449 |
complementary to original bottom strand |
| OB |
15455 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61402 |
| Unique alignments |
57782 |
| Duplicates removed |
3620 |
| Duplicated alignments were found at 3430 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1391498 |
| Methylated C's in CpG context |
17611 |
| Methylated C's in CHG context |
1159 |
| Methylated C's in CHH context |
5021 |
| Unmethylated C's in CpG context |
160205 |
| Unmethylated C's in CHG context |
239409 |
| Unmethylated C's in CHH context |
968093 |
| Percentage methylation (CpG context) |
9.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
