Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61792 |
| Pairs without alignments under any condition |
21880 |
| Pairs that did not map uniquely |
16328 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2186112 |
| Methylated C's in CpG context |
28902 |
| Methylated C's in CHG context |
1781 |
| Methylated C's in CHH context |
7859 |
| Methylated C's in Unknown context |
89 |
| Unmethylated C's in CpG context |
251857 |
| Unmethylated C's in CHG context |
378544 |
| Unmethylated C's in CHH context |
1517169 |
| Unmethylated C's in Unknown context |
5394 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15417 |
original top strand |
| CTOT |
15456 |
complementary to original top strand |
| CTOB |
15454 |
complementary to original bottom strand |
| OB |
15465 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61792 |
| Unique alignments |
57342 |
| Duplicates removed |
4450 |
| Duplicated alignments were found at 4165 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1406264 |
| Methylated C's in CpG context |
18175 |
| Methylated C's in CHG context |
1149 |
| Methylated C's in CHH context |
5038 |
| Unmethylated C's in CpG context |
160953 |
| Unmethylated C's in CHG context |
241126 |
| Unmethylated C's in CHH context |
979823 |
| Percentage methylation (CpG context) |
10.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
