Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61367 |
| Pairs without alignments under any condition |
22024 |
| Pairs that did not map uniquely |
16609 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2130237 |
| Methylated C's in CpG context |
26218 |
| Methylated C's in CHG context |
1646 |
| Methylated C's in CHH context |
7156 |
| Methylated C's in Unknown context |
62 |
| Unmethylated C's in CpG context |
241599 |
| Unmethylated C's in CHG context |
358327 |
| Unmethylated C's in CHH context |
1495291 |
| Unmethylated C's in Unknown context |
5307 |
| Percentage methylation (CpG context) |
9.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15356 |
original top strand |
| CTOT |
15506 |
complementary to original top strand |
| CTOB |
15379 |
complementary to original bottom strand |
| OB |
15126 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61367 |
| Unique alignments |
57478 |
| Duplicates removed |
3889 |
| Duplicated alignments were found at 3658 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1353399 |
| Methylated C's in CpG context |
16221 |
| Methylated C's in CHG context |
1001 |
| Methylated C's in CHH context |
4482 |
| Unmethylated C's in CpG context |
152373 |
| Unmethylated C's in CHG context |
225562 |
| Unmethylated C's in CHH context |
953760 |
| Percentage methylation (CpG context) |
9.6% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
