Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60961 |
| Pairs without alignments under any condition |
21931 |
| Pairs that did not map uniquely |
17108 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
2144161 |
| Methylated C's in CpG context |
28507 |
| Methylated C's in CHG context |
1764 |
| Methylated C's in CHH context |
7966 |
| Methylated C's in Unknown context |
80 |
| Unmethylated C's in CpG context |
250610 |
| Unmethylated C's in CHG context |
374259 |
| Unmethylated C's in CHH context |
1481055 |
| Unmethylated C's in Unknown context |
5438 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15225 |
original top strand |
| CTOT |
15162 |
complementary to original top strand |
| CTOB |
15415 |
complementary to original bottom strand |
| OB |
15158 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60960 |
| Unique alignments |
56886 |
| Duplicates removed |
4074 |
| Duplicated alignments were found at 3795 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1358219 |
| Methylated C's in CpG context |
17603 |
| Methylated C's in CHG context |
1113 |
| Methylated C's in CHH context |
5036 |
| Unmethylated C's in CpG context |
157564 |
| Unmethylated C's in CHG context |
234678 |
| Unmethylated C's in CHH context |
942225 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
