Alignment Stats
Sequence pairs analysed in total |
100000 |
Paired-end alignments with a unique best hit |
61154 |
Pairs without alignments under any condition |
21890 |
Pairs that did not map uniquely |
16956 |
Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
Total C's analysed |
2154179 |
Methylated C's in CpG context |
29648 |
Methylated C's in CHG context |
1760 |
Methylated C's in CHH context |
7608 |
Methylated C's in Unknown context |
68 |
Unmethylated C's in CpG context |
251436 |
Unmethylated C's in CHG context |
375780 |
Unmethylated C's in CHH context |
1487947 |
Unmethylated C's in Unknown context |
5343 |
Percentage methylation (CpG context) |
10.5% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
15210 |
original top strand |
CTOT |
15214 |
complementary to original top strand |
CTOB |
15355 |
complementary to original bottom strand |
OB |
15374 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
61153 |
Unique alignments |
57147 |
Duplicates removed |
4006 |
Duplicated alignments were found at 3715 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
1367044 |
Methylated C's in CpG context |
18292 |
Methylated C's in CHG context |
1099 |
Methylated C's in CHH context |
4850 |
Unmethylated C's in CpG context |
158774 |
Unmethylated C's in CHG context |
236251 |
Unmethylated C's in CHH context |
947778 |
Percentage methylation (CpG context) |
10.3% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot