Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61885 |
| Pairs without alignments under any condition |
21378 |
| Pairs that did not map uniquely |
16737 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
2175764 |
| Methylated C's in CpG context |
28518 |
| Methylated C's in CHG context |
1819 |
| Methylated C's in CHH context |
7613 |
| Methylated C's in Unknown context |
87 |
| Unmethylated C's in CpG context |
256743 |
| Unmethylated C's in CHG context |
382839 |
| Unmethylated C's in CHH context |
1498232 |
| Unmethylated C's in Unknown context |
5430 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15407 |
original top strand |
| CTOT |
15476 |
complementary to original top strand |
| CTOB |
15624 |
complementary to original bottom strand |
| OB |
15377 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61884 |
| Unique alignments |
55727 |
| Duplicates removed |
6157 |
| Duplicated alignments were found at 5596 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1352824 |
| Methylated C's in CpG context |
17147 |
| Methylated C's in CHG context |
1109 |
| Methylated C's in CHH context |
4655 |
| Unmethylated C's in CpG context |
158036 |
| Unmethylated C's in CHG context |
235705 |
| Unmethylated C's in CHH context |
936172 |
| Percentage methylation (CpG context) |
9.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
