zr3534_8_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 54631 lines in total Total number of methylation call strings processed: 109262 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1286222 Total methylated C's in CpG context: 16614 Total methylated C's in CHG context: 991 Total methylated C's in CHH context: 4536 Total C to T conversions in CpG context: 147209 Total C to T conversions in CHG context: 220589 Total C to T conversions in CHH context: 896283 C methylated in CpG context: 10.1% C methylated in CHG context: 0.4% C methylated in CHH context: 0.5%