Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61281 |
| Pairs without alignments under any condition |
23002 |
| Pairs that did not map uniquely |
15717 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2136176 |
| Methylated C's in CpG context |
28095 |
| Methylated C's in CHG context |
1704 |
| Methylated C's in CHH context |
7936 |
| Methylated C's in Unknown context |
89 |
| Unmethylated C's in CpG context |
244900 |
| Unmethylated C's in CHG context |
369082 |
| Unmethylated C's in CHH context |
1484459 |
| Unmethylated C's in Unknown context |
5394 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15063 |
original top strand |
| CTOT |
15408 |
complementary to original top strand |
| CTOB |
15464 |
complementary to original bottom strand |
| OB |
15346 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61281 |
| Unique alignments |
55478 |
| Duplicates removed |
5803 |
| Duplicated alignments were found at 5250 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1350779 |
| Methylated C's in CpG context |
17175 |
| Methylated C's in CHG context |
1062 |
| Methylated C's in CHH context |
5015 |
| Unmethylated C's in CpG context |
153801 |
| Unmethylated C's in CHG context |
231013 |
| Unmethylated C's in CHH context |
942713 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
