zr3534_6_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 54560 lines in total Total number of methylation call strings processed: 109120 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1329087 Total methylated C's in CpG context: 17277 Total methylated C's in CHG context: 1077 Total methylated C's in CHH context: 4605 Total C to T conversions in CpG context: 152699 Total C to T conversions in CHG context: 227992 Total C to T conversions in CHH context: 925437 C methylated in CpG context: 10.2% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%