Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60946 |
| Pairs without alignments under any condition |
23409 |
| Pairs that did not map uniquely |
15645 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2131023 |
| Methylated C's in CpG context |
28664 |
| Methylated C's in CHG context |
1772 |
| Methylated C's in CHH context |
7458 |
| Methylated C's in Unknown context |
59 |
| Unmethylated C's in CpG context |
247062 |
| Unmethylated C's in CHG context |
369466 |
| Unmethylated C's in CHH context |
1476601 |
| Unmethylated C's in Unknown context |
5369 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15361 |
original top strand |
| CTOT |
15232 |
complementary to original top strand |
| CTOB |
15290 |
complementary to original bottom strand |
| OB |
15063 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60946 |
| Unique alignments |
54560 |
| Duplicates removed |
6386 |
| Duplicated alignments were found at 5727 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1329087 |
| Methylated C's in CpG context |
17277 |
| Methylated C's in CHG context |
1077 |
| Methylated C's in CHH context |
4605 |
| Unmethylated C's in CpG context |
152699 |
| Unmethylated C's in CHG context |
227992 |
| Unmethylated C's in CHH context |
925437 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
