zr3534_5_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 55086 lines in total Total number of methylation call strings processed: 110172 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1321450 Total methylated C's in CpG context: 18706 Total methylated C's in CHG context: 1142 Total methylated C's in CHH context: 4868 Total C to T conversions in CpG context: 149852 Total C to T conversions in CHG context: 227304 Total C to T conversions in CHH context: 919578 C methylated in CpG context: 11.1% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%