zr3534_2_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 54949 lines in total Total number of methylation call strings processed: 109898 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1337084 Total methylated C's in CpG context: 16934 Total methylated C's in CHG context: 1053 Total methylated C's in CHH context: 4861 Total C to T conversions in CpG context: 156596 Total C to T conversions in CHG context: 230643 Total C to T conversions in CHH context: 926997 C methylated in CpG context: 9.8% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%