Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61056 |
| Pairs without alignments under any condition |
22398 |
| Pairs that did not map uniquely |
16546 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2137198 |
| Methylated C's in CpG context |
28100 |
| Methylated C's in CHG context |
1748 |
| Methylated C's in CHH context |
7871 |
| Methylated C's in Unknown context |
52 |
| Unmethylated C's in CpG context |
252518 |
| Unmethylated C's in CHG context |
373045 |
| Unmethylated C's in CHH context |
1473916 |
| Unmethylated C's in Unknown context |
5087 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15479 |
original top strand |
| CTOT |
15217 |
complementary to original top strand |
| CTOB |
15036 |
complementary to original bottom strand |
| OB |
15324 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61056 |
| Unique alignments |
54949 |
| Duplicates removed |
6107 |
| Duplicated alignments were found at 5542 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1337084 |
| Methylated C's in CpG context |
16934 |
| Methylated C's in CHG context |
1053 |
| Methylated C's in CHH context |
4861 |
| Unmethylated C's in CpG context |
156596 |
| Unmethylated C's in CHG context |
230643 |
| Unmethylated C's in CHH context |
926997 |
| Percentage methylation (CpG context) |
9.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
