Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61618 |
| Pairs without alignments under any condition |
22474 |
| Pairs that did not map uniquely |
15908 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2147800 |
| Methylated C's in CpG context |
28863 |
| Methylated C's in CHG context |
1776 |
| Methylated C's in CHH context |
7687 |
| Methylated C's in Unknown context |
61 |
| Unmethylated C's in CpG context |
251766 |
| Unmethylated C's in CHG context |
374609 |
| Unmethylated C's in CHH context |
1483099 |
| Unmethylated C's in Unknown context |
5309 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15265 |
original top strand |
| CTOT |
15548 |
complementary to original top strand |
| CTOB |
15353 |
complementary to original bottom strand |
| OB |
15452 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61618 |
| Unique alignments |
54892 |
| Duplicates removed |
6726 |
| Duplicated alignments were found at 6009 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1330789 |
| Methylated C's in CpG context |
17210 |
| Methylated C's in CHG context |
1071 |
| Methylated C's in CHH context |
4667 |
| Unmethylated C's in CpG context |
154648 |
| Unmethylated C's in CHG context |
229591 |
| Unmethylated C's in CHH context |
923602 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
