[2021-06-09 23:10:42,466] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-06-09 23:10:42,466] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/sr320/.multiqc_config.yaml [2021-06-09 23:10:42,467] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-06-09 23:10:42,467] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-06-09 23:10:47,755] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-06-09 23:10:47,755] multiqc [INFO ] This is MultiQC v1.8 [2021-06-09 23:10:47,756] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-06-09 23:10:47,756] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/sr320/060921-bigC [2021-06-09 23:10:47,756] multiqc [INFO ] Template : default [2021-06-09 23:10:47,757] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-06-09 23:10:47,757] multiqc [INFO ] Searching : /gscratch/scrubbed/sr320/060921-bigC [2021-06-09 23:10:47,758] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-06-09 23:10:47,758] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmppbtgphv4 [2021-06-09 23:10:48,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:48,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:48,262] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:48,262] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:48,262] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:48,262] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:48,293] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:49,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1_fastqc.html [2021-06-09 23:10:49,684] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:49,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:49,685] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:49,685] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:49,685] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:49,685] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:49,704] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:50,947] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_19_R1_bismark_bt2_PE_report.html [2021-06-09 23:10:50,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_8_R1_fastqc.html [2021-06-09 23:10:50,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:50,983] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:50,983] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:50,983] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:50,983] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:50,983] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:51,002] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:52,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:52,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:52,368] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:52,368] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:52,368] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:52,368] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:52,368] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:52,368] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:54,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:54,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:54,120] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:54,120] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:54,120] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:54,120] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:54,120] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:54,120] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:55,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_18_R1_fastqc.html [2021-06-09 23:10:55,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R2_fastqc.html [2021-06-09 23:10:55,969] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:55,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:55,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:55,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:55,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:55,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:56,001] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:57,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:57,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:57,360] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:57,360] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:57,360] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:57,360] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:57,387] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:58,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:58,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:58,612] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:58,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:58,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:58,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:58,633] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:59,590] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_5_R2_fastqc.html [2021-06-09 23:10:59,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:59,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:59,665] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:59,665] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:59,665] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:59,665] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:10:59,690] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:00,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1_bismark_bt2_pe.bam [2021-06-09 23:11:00,859] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:00,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:00,861] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:00,861] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:00,861] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:00,861] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:00,885] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:01,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:01,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:01,982] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:01,982] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:01,982] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:01,982] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:02,011] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:03,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:03,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:03,360] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:03,360] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:03,360] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:03,360] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:03,360] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:03,360] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:05,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:05,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:05,037] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:05,037] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:05,037] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:05,037] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:05,065] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:06,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_2_R2_fastqc.html [2021-06-09 23:11:06,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:06,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:06,372] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:06,372] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:06,372] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:06,372] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:06,399] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:07,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1_bismark_bt2_PE_report.html [2021-06-09 23:11:07,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:07,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:07,670] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:07,670] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:07,670] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:07,670] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:07,689] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:08,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R1_fastqc.html [2021-06-09 23:11:08,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R2_fastqc.html [2021-06-09 23:11:08,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:08,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:08,982] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:08,982] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:08,982] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:08,982] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:09,001] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:10,250] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1_fastqc.html [2021-06-09 23:11:10,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:10,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:10,328] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:10,328] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:10,328] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:10,328] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:10,356] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:11,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:11,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:11,752] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:11,752] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:11,752] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:11,752] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:11,779] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:12,801] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:12,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:12,802] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:12,802] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:12,802] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:12,802] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:12,822] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:14,176] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:14,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:14,178] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:14,178] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:14,178] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:14,178] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:14,178] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:14,178] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:15,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_11_R1_bismark_bt2_pe.bam [2021-06-09 23:11:15,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1_bismark_bt2_PE_report.html [2021-06-09 23:11:15,893] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_2_R1_bismark_bt2_pe.bam [2021-06-09 23:11:16,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:16,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:16,050] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:16,051] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:16,051] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:16,051] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:16,051] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:16,051] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:19,162] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_16_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:11:19,243] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:19,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:19,245] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:19,245] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:19,245] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:19,245] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:19,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:20,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:20,527] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:20,527] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:20,527] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:20,527] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:20,527] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:20,527] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:20,527] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:22,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:22,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:22,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:22,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:22,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:22,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:22,310] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:23,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_8_R1_bismark_bt2_PE_report.html [2021-06-09 23:11:23,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1_bismark_bt2_pe.bam [2021-06-09 23:11:23,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:23,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:23,317] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:23,317] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:23,317] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:23,317] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:23,317] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:23,317] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:25,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:25,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:25,082] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:25,082] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:25,082] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:25,082] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:25,113] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:26,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:26,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:26,390] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:26,390] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:26,390] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:26,391] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:26,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:27,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:27,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:27,929] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:27,929] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:27,929] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:27,929] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:27,929] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:27,929] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:30,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:30,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:30,742] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:30,742] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:30,742] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:30,742] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:30,761] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:31,987] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_5_R1_fastqc.html [2021-06-09 23:11:32,028] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R2_fastqc.html [2021-06-09 23:11:32,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:32,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:32,108] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:32,108] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:32,108] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:32,108] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:32,135] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:33,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:33,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:33,464] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:33,464] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:33,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:33,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:33,464] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:33,464] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:35,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:35,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:35,221] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:35,221] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:35,221] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:35,221] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:35,221] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:35,221] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:36,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:36,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:36,948] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:36,948] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:36,948] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:36,948] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:36,966] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:38,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1_fastqc.html [2021-06-09 23:11:38,143] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:38,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:38,144] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:38,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:38,144] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:38,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:38,163] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:39,412] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R1_bismark_bt2_pe.bam [2021-06-09 23:11:39,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:39,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:39,435] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:39,435] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:39,435] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:39,435] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:39,454] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:40,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1_bismark_bt2_pe.bam [2021-06-09 23:11:40,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R1_bismark_bt2_PE_report.html [2021-06-09 23:11:40,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:40,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:40,794] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:40,794] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:40,794] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:40,794] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:40,794] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:40,794] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:42,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_11_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:11:42,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:42,561] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:42,561] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:42,561] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:42,561] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:42,561] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:42,588] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:43,836] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:43,837] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:43,837] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:43,837] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:43,837] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:43,837] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:43,857] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:45,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:45,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:45,160] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:45,160] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:45,160] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:45,160] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:45,180] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:46,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:46,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:46,609] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:46,609] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:46,609] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:46,609] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:46,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:48,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:48,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:48,065] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:48,065] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:48,065] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:48,065] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:48,065] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:48,065] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:49,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:49,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:49,831] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:49,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:49,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:49,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:49,832] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:49,832] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:51,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:51,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:51,573] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:51,573] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:51,573] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:51,573] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:51,573] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:51,573] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:53,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:53,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:53,362] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:53,362] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:53,362] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:53,362] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:53,392] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:54,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_2_R2_fastqc.html [2021-06-09 23:11:54,769] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:54,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:54,771] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:54,771] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:54,771] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:54,771] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:54,798] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:56,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:56,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:56,151] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:56,152] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:56,152] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:56,152] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:56,152] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:56,152] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:59,284] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:59,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:59,286] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:59,286] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:59,286] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:59,286] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:59,286] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:11:59,286] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:00,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:12:00,997] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:00,998] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:00,998] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:00,998] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:00,998] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:00,998] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:01,017] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:02,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:02,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:02,295] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:02,295] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:02,295] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:02,295] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:02,313] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:03,508] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:03,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:03,509] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:03,509] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:03,509] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:03,509] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:03,528] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:04,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:04,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:04,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:04,815] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:04,815] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:04,815] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:04,833] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:06,113] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:06,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:06,114] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:06,114] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:06,114] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:06,114] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:06,142] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:07,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_11_R1_bismark_bt2_PE_report.html [2021-06-09 23:12:07,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:07,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:07,430] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:07,430] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:07,430] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:07,430] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:07,449] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:08,742] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:08,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:08,743] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:08,743] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:08,743] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:08,743] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:08,744] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:08,744] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:10,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:10,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:10,497] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:10,497] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:10,497] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:10,497] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:10,497] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:10,497] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:12,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:12,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:12,202] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:12,202] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:12,202] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:12,202] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:12,231] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:13,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:13,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:13,623] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:13,623] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:13,623] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:13,623] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:13,623] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:13,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:15,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:15,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:15,316] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:15,316] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:15,316] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:15,316] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:15,316] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:15,316] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:17,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:17,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:17,123] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:17,123] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:17,123] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:17,123] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:17,154] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:18,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:18,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:18,554] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:18,554] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:18,554] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:18,554] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:18,580] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:19,839] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:19,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:19,841] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:19,841] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:19,841] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:19,841] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:19,870] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:21,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:21,250] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:21,250] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:21,250] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:21,250] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:21,250] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:21,279] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:22,538] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0503_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:12:22,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:22,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:22,614] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:22,614] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:22,614] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:22,614] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:22,643] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:23,906] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R2_fastqc.html [2021-06-09 23:12:23,954] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:23,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:23,955] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:23,955] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:23,955] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:23,955] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:23,970] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:24,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:24,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:24,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:24,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:24,954] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:24,954] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:24,972] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:26,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1_fastqc.html [2021-06-09 23:12:26,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_7_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:12:26,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:26,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:26,162] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:26,162] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:26,162] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:26,162] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:26,181] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:27,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1_fastqc.html [2021-06-09 23:12:27,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:27,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:27,457] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:27,457] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:27,457] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:27,457] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:27,457] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:27,457] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:29,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:29,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:29,254] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:29,255] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:29,255] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:29,255] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:29,255] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:29,255] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:30,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R2_fastqc.html [2021-06-09 23:12:30,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1_bismark_bt2_PE_report.html [2021-06-09 23:12:31,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:31,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:31,017] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:31,017] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:31,017] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:31,017] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:31,017] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:31,017] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:32,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:32,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:32,773] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:32,773] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:32,773] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:32,773] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:32,773] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:32,773] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:34,579] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:34,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:34,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:34,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:34,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:34,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:34,610] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:35,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:35,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:35,937] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:35,937] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:35,937] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:35,937] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:35,937] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:35,937] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:37,665] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:37,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:37,667] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:37,667] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:37,667] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:37,667] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:37,667] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:37,667] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:39,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1_bismark_bt2_PE_report.html [2021-06-09 23:12:39,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bismark_summary_report.txt [2021-06-09 23:12:39,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bismark_summary_report.txt [2021-06-09 23:12:39,471] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:39,472] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:39,472] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:39,472] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:39,473] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:39,473] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:39,473] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:39,473] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:42,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_2_R2_fastqc.html [2021-06-09 23:12:42,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:42,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:42,550] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:42,550] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:42,550] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:42,551] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:42,585] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:43,956] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R1_bismark_bt2_pe.bam [2021-06-09 23:12:44,031] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:44,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:44,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:44,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:44,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:44,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:44,032] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:44,032] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:45,730] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_10_R1_bismark_bt2_PE_report.html [2021-06-09 23:12:45,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:45,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:45,852] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:45,852] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:45,852] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:45,852] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:45,883] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:47,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R2_fastqc.html [2021-06-09 23:12:47,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:47,225] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:47,225] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:47,225] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:47,225] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:47,225] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:47,225] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:47,225] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:48,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_3_R1_bismark_bt2_PE_report.html [2021-06-09 23:12:49,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:49,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:49,095] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:49,096] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:49,096] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:49,096] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:49,128] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:50,411] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_4_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:12:50,480] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:50,481] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:50,481] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:50,481] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:50,482] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:50,482] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:50,482] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:50,482] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:52,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_20_R1_bismark_bt2_pe.bam [2021-06-09 23:12:52,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_6_R1_bismark_bt2_PE_report.html [2021-06-09 23:12:52,151] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_13_R2_fastqc.html [2021-06-09 23:12:52,277] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:52,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:52,279] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:52,279] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:52,279] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:52,279] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:52,279] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:52,279] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:53,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1_bismark_bt2_pe.bam [2021-06-09 23:12:53,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_17_R1_fastqc.html [2021-06-09 23:12:54,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:54,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:54,063] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:54,063] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:54,063] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:54,063] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:54,063] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:54,063] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:55,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_24_R1_fastqc.html [2021-06-09 23:12:55,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:55,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:55,847] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:55,847] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:55,847] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:55,847] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:55,879] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:57,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:57,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:57,361] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:57,361] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:57,361] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:57,361] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:57,361] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:57,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:59,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_8_R1_bismark_bt2_pe.bam [2021-06-09 23:12:59,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_5_R1_bismark_bt2_pe.bam [2021-06-09 23:12:59,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_3_R1_bismark_bt2_PE_report.html [2021-06-09 23:12:59,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1_fastqc.html [2021-06-09 23:12:59,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_16_R1_bismark_bt2_PE_report.html [2021-06-09 23:12:59,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:59,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:59,154] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:12:59,154] multiqc [DEBUG ] File ignored by 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23:13:00,825] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_7_R1_bismark_bt2_pe.bam [2021-06-09 23:13:00,826] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_7_R1_bismark_bt2_PE_report.html [2021-06-09 23:13:00,826] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:13:00,919] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:00,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:00,921] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:00,921] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:00,921] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:00,921] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:00,945] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:02,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:02,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:02,057] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:02,057] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:02,057] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:02,057] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:02,057] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:02,057] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:03,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:03,889] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:03,889] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:03,889] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:03,889] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize 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[DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:08,634] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:08,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:08,635] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:08,635] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:08,635] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 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[2021-06-09 23:13:09,975] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:09,975] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:09,975] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:09,975] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:09,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:11,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_22_R2_fastqc.html [2021-06-09 23:13:11,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:13:11,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:13:11,260] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:11,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:11,261] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:11,262] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 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multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:12,806] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:12,806] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:12,807] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:12,807] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:12,807] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern 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23:13:15,866] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:15,866] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:15,866] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:15,867] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:15,867] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:17,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:17,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:17,823] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:17,823] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:17,823] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:17,823] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:17,857] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:19,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:19,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:19,375] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:19,375] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:19,375] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:19,375] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:19,375] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:19,375] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:21,084] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:21,085] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:21,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:21,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:21,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:21,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:21,105] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:22,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:22,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:22,424] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:22,424] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:22,424] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:22,424] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:22,454] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:23,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:13:23,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:23,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:23,763] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:23,763] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:23,763] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:23,763] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:23,782] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:25,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:25,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:25,042] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:25,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:25,043] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:25,043] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:25,043] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:25,044] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:25,062] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:26,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:26,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:26,390] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:26,390] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:26,390] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:26,390] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:26,390] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:26,390] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:28,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:28,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:28,127] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:28,127] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:28,127] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:28,127] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:28,142] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:29,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:29,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:29,175] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:29,175] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:29,175] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:29,175] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:29,196] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:30,534] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R2_fastqc.html [2021-06-09 23:13:30,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:30,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:30,616] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:30,616] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:30,616] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:30,616] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:30,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:31,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:31,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:31,646] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_1_R2_fastqc.html [2021-06-09 23:13:31,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:31,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:31,757] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:31,757] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:31,757] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:31,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:31,784] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:33,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_7_R1_bismark_bt2_PE_report.html [2021-06-09 23:13:33,155] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:33,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:33,156] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:33,157] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:33,157] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:33,157] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:33,187] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:34,738] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:34,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:34,740] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:34,740] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:34,740] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:34,740] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:34,771] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:36,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1_fastqc.html [2021-06-09 23:13:36,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:36,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:36,169] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:36,169] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:36,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:36,169] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:36,197] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:37,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_2_R1_fastqc.html [2021-06-09 23:13:37,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:37,502] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:37,502] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:37,502] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:37,502] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:37,502] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:37,529] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:38,613] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:38,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:38,615] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:38,615] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:38,615] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:38,615] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:38,648] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:40,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:40,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:40,232] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:40,232] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:40,232] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:40,232] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:40,251] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:41,489] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_5_R1_bismark_bt2_PE_report.html [2021-06-09 23:13:41,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:41,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:41,585] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:41,585] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:41,585] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:41,585] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:41,585] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:41,585] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:43,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:43,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:43,354] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:43,354] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:43,354] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:43,354] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:43,354] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:43,354] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:44,999] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R1_bismark_bt2_pe.bam [2021-06-09 23:13:45,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:45,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:45,077] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:45,077] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:45,077] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:45,077] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:45,105] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:46,329] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R2_fastqc.html [2021-06-09 23:13:46,408] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:46,410] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:46,410] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:46,410] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:46,410] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:46,410] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:46,410] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:46,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:48,085] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:48,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:48,087] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:48,087] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:48,087] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:48,087] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:48,116] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:49,530] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:49,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:49,532] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:49,532] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:49,532] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:49,532] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:49,532] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:49,532] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:51,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:51,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:51,336] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:51,336] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:51,336] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:51,336] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:51,336] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:51,336] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:52,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_15_R1_bismark_bt2_PE_report.html [2021-06-09 23:13:53,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:53,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:53,021] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:53,021] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:53,021] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:53,022] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:53,022] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:53,022] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:54,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-1970763.out [2021-06-09 23:13:54,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-1970763.out [2021-06-09 23:13:54,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: slurm-1970763.out [2021-06-09 23:13:54,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: slurm-1970763.out [2021-06-09 23:13:54,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: slurm-1970763.out [2021-06-09 23:13:54,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: slurm-1970763.out [2021-06-09 23:13:54,792] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: slurm-1970763.out [2021-06-09 23:13:54,792] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: slurm-1970763.out [2021-06-09 23:13:57,106] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_15_R1_bismark_bt2_pe.bam [2021-06-09 23:13:57,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:57,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:57,200] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:57,200] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:57,201] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:57,201] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:57,201] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:57,201] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:58,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:58,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:58,949] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:58,949] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:58,949] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:58,949] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:58,949] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:13:58,949] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:00,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:00,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_16_R1_bismark_bt2_pe.bam [2021-06-09 23:14:00,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:00,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:00,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:00,675] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:00,675] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:00,675] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:00,675] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:00,697] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:01,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R2_fastqc.html [2021-06-09 23:14:01,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:01,749] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:01,749] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:01,749] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:01,749] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:01,749] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:01,777] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:03,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_7_R1_fastqc.html [2021-06-09 23:14:03,105] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:03,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:03,107] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:03,107] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:03,107] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:03,107] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:03,107] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:03,107] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:04,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R1_bismark_bt2_pe.bam [2021-06-09 23:14:04,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_22_R1_bismark_bt2_PE_report.html [2021-06-09 23:14:04,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_14_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:04,919] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:04,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:04,921] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:04,921] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:04,921] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:04,921] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:04,921] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:04,922] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:06,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:06,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:06,830] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:06,830] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:06,830] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:06,830] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:06,830] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:06,830] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:08,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R1_fastqc.html [2021-06-09 23:14:08,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1_fastqc.html [2021-06-09 23:14:08,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:08,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:08,566] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:08,566] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:08,566] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:08,566] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:08,585] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:09,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:09,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:09,849] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:09,849] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:09,849] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:09,849] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:09,867] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:11,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:11,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:11,183] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:11,183] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:11,183] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:11,183] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:11,183] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:11,183] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:12,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:12,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:12,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_7_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:12,896] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:12,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:12,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:12,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:12,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:12,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:12,917] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:14,196] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:14,197] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:14,197] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:14,197] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:14,197] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:14,197] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:14,216] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:15,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:15,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:15,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:15,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:15,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:15,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:15,585] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:16,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_7_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:16,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_3_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:16,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:16,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:16,882] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:16,882] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:16,882] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:16,882] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:16,906] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:17,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_7_R2_fastqc.html [2021-06-09 23:14:17,944] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0503_R1_bismark_bt2_PE_report.html [2021-06-09 23:14:17,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_2_R1_bismark_bt2_PE_report.html [2021-06-09 23:14:18,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:18,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:18,030] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:18,030] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:18,030] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:18,030] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:18,030] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:18,030] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:19,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1_fastqc.html [2021-06-09 23:14:19,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1_bismark_bt2_pe.bam [2021-06-09 23:14:19,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:19,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:19,710] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:19,710] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:19,711] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:19,711] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:19,711] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:19,711] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:21,468] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:21,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:21,470] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:21,470] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:21,470] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:21,470] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:21,499] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:22,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R2_fastqc.html [2021-06-09 23:14:22,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:22,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:22,768] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:22,768] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:22,768] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:22,768] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:22,786] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:23,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_5_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:24,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:24,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:24,009] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:24,009] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:24,009] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:24,009] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:24,037] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:25,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:25,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R2_fastqc.html [2021-06-09 23:14:25,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R2_fastqc.html [2021-06-09 23:14:25,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:25,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:25,424] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:25,424] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:25,424] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:25,424] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:25,456] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:26,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:26,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:26,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R2_fastqc.html [2021-06-09 23:14:26,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_5_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:26,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_6_R1_bismark_bt2_pe.bam [2021-06-09 23:14:26,893] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:26,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:26,895] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:26,895] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:26,895] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:26,895] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:26,927] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:28,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:28,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:28,248] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:28,248] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:28,248] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:28,248] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:28,277] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:29,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:29,638] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:29,638] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:29,638] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:29,638] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:29,638] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:29,638] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:29,638] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:31,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:31,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:31,392] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:31,392] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:31,392] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:31,392] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:31,392] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:31,392] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:33,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:33,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:33,102] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:33,102] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:33,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:33,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:33,103] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:33,103] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:34,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:34,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:34,839] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:34,839] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:34,840] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:34,840] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:34,840] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:34,840] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:36,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:36,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:36,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:36,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:36,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:36,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:36,595] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:37,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:37,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:37,830] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:37,830] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:37,830] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:37,830] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:37,830] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:37,830] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:39,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:39,474] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R2_fastqc.html [2021-06-09 23:14:39,506] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:39,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:39,508] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:39,508] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:39,508] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:39,508] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:39,527] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:40,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:40,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:40,839] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:40,840] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:40,840] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:40,840] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:40,840] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:40,840] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:42,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:42,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:42,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:42,587] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:42,587] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:42,587] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:42,588] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:42,616] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:43,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:43,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:43,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:43,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:43,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:43,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:43,996] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:43,996] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:45,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R2_fastqc.html [2021-06-09 23:14:45,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:45,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:45,833] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:45,833] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:45,834] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:45,834] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:45,864] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:47,141] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:47,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:47,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:47,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:47,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:47,143] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:47,143] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:47,143] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:48,817] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_8_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:48,840] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:48,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:48,841] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:48,841] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:48,842] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:48,842] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:48,860] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:50,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:50,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:50,126] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:50,126] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:50,127] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:50,127] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:50,146] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:51,539] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:51,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:51,541] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:51,541] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:51,541] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:51,541] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:51,541] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:51,541] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:53,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:53,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:53,270] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:53,270] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:53,270] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:53,270] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:53,298] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:54,573] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:54,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:54,575] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:54,575] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:54,575] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:54,575] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:54,575] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:54,575] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:56,228] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:14:56,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_18_R1_bismark_bt2_PE_report.html [2021-06-09 23:14:56,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1_bismark_bt2_pe.bam [2021-06-09 23:14:56,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_13_R1_fastqc.html [2021-06-09 23:14:56,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_21_R1_bismark_bt2_PE_report.html [2021-06-09 23:14:56,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:56,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:56,372] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:56,372] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:56,372] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:56,372] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:56,373] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:56,373] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:58,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:58,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:58,130] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:58,130] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:58,130] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:58,130] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:58,157] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:59,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:59,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:59,423] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:59,423] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:59,423] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:59,423] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:14:59,455] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:00,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:00,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:00,877] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:00,877] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:00,877] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:00,878] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:00,907] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:02,171] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_21_R1_bismark_bt2_pe.bam [2021-06-09 23:15:02,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_8_R1_fastqc.html [2021-06-09 23:15:02,306] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:02,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:02,308] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:02,308] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:02,308] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:02,308] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:02,308] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:02,308] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:04,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:04,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:04,013] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:04,013] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:04,013] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:04,013] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:04,032] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:05,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:05,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:05,397] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:05,397] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:05,397] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:05,397] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:05,428] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:06,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:06,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:06,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:06,759] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:06,759] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:06,759] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:06,789] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:08,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:08,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:08,100] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:08,100] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:08,100] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:08,100] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:08,100] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:08,100] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:09,806] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:09,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:09,807] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:09,807] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:09,808] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:09,808] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:09,808] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:09,808] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:11,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1_fastqc.html [2021-06-09 23:15:11,468] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_5_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:15:11,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:11,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:11,552] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:11,552] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:11,552] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:11,552] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:11,552] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:11,553] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:13,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:13,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:13,336] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:13,336] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:13,337] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:13,337] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:13,337] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:13,337] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:15,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:15,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:15,142] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:15,142] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:15,142] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:15,142] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:15,170] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:16,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:16,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:16,510] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:16,511] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:16,511] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:16,511] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:16,537] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:17,836] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:17,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:17,838] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:17,838] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:17,838] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:17,838] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:17,867] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:19,164] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:19,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:19,166] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:19,166] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:19,166] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:19,166] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:19,166] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:19,166] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:20,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:20,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:20,966] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:20,966] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:20,966] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:20,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:20,967] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:20,967] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5202_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5202_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,815] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,816] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,816] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,816] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,816] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,816] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:22,816] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:24,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_24_R2_fastqc.html [2021-06-09 23:15:24,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_23_R2_fastqc.html [2021-06-09 23:15:24,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:24,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:24,573] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_6_R1_fastqc.html [2021-06-09 23:15:24,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:24,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:24,658] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:24,658] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:24,658] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:24,658] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:24,690] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:26,002] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:26,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:26,004] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:26,004] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:26,004] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:26,004] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:26,027] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:27,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:27,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:27,068] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:27,068] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:27,068] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:27,068] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:27,100] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:28,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:28,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:28,515] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:28,515] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:28,515] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:28,515] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:28,543] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:29,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:29,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:29,879] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:29,879] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:29,879] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:29,879] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:29,910] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:31,349] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:31,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:31,351] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:31,351] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:31,351] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:31,351] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:31,380] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:32,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5903_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:32,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5903_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:32,874] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:32,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:32,876] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:32,876] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:32,876] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:32,876] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:32,913] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:34,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:34,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:34,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:34,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:34,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:34,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:34,600] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:35,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_22_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:15:35,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:35,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:35,974] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:35,974] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:35,974] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:35,974] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:36,004] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:37,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:37,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:37,325] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:37,325] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:37,325] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:37,325] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:37,353] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:38,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R2_fastqc.html [2021-06-09 23:15:38,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1_bismark_bt2_PE_report.html [2021-06-09 23:15:38,645] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:38,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:38,647] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:38,647] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:38,647] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:38,647] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:38,647] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:38,647] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:40,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:40,383] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:40,383] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:40,383] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:40,383] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:40,383] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:40,402] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:41,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_6_R1_fastqc.html [2021-06-09 23:15:41,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:15:41,739] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:41,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:41,741] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:41,741] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:41,741] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:41,741] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:41,773] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:43,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R1_fastqc.html [2021-06-09 23:15:43,053] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:15:43,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_1_R2_fastqc.html [2021-06-09 23:15:43,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:43,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:43,119] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:43,119] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:43,119] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern 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limit: CHG_OB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:45,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R2_fastqc.html [2021-06-09 23:15:45,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:45,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:45,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:45,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:45,954] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:45,954] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:45,972] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:47,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R2_fastqc.html [2021-06-09 23:15:47,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:47,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:47,280] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:47,280] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:47,280] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:47,280] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:47,309] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:48,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_17_R1_bismark_bt2_PE_report.html [2021-06-09 23:15:48,637] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:48,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:48,639] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:48,639] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:48,639] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:48,639] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:48,667] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:49,941] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:49,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:49,943] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:49,943] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:49,943] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:49,943] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:49,943] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:49,943] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:51,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_2_R1_fastqc.html [2021-06-09 23:15:51,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:51,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:51,758] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:51,758] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:51,758] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:51,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:51,758] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:51,758] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:53,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_4_R1_bismark_bt2_pe.bam [2021-06-09 23:15:53,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:53,481] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:53,481] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:53,481] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:53,481] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:53,481] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:53,481] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:53,481] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:55,139] multiqc [DEBUG ] File 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File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:59,184] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:59,184] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:59,185] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:15:59,185] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:02,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1_fastqc.html [2021-06-09 23:16:02,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:02,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:02,422] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:02,422] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:02,422] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:02,422] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:02,448] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:03,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:03,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:03,790] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:03,790] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:03,791] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:03,791] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:03,791] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:03,791] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:05,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R2_fastqc.html [2021-06-09 23:16:05,517] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:05,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:05,519] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:05,519] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:05,519] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:05,519] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:05,519] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:05,519] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:07,265] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:07,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:07,267] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:07,267] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:07,267] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:07,267] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:07,267] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:07,267] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:09,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:09,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:09,043] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:09,043] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:09,043] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:09,043] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:09,072] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:10,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R2_fastqc.html [2021-06-09 23:16:10,364] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:10,365] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:10,365] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:10,365] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:10,365] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:10,365] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:10,365] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:10,366] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:12,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_1_R1_bismark_bt2_pe.bam [2021-06-09 23:16:12,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:12,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:12,102] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:12,103] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:12,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:12,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:12,103] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:12,103] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:13,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:13,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:13,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:13,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:13,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:13,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:13,824] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:15,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:15,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:15,154] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:15,154] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:15,154] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:15,154] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:15,181] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:16,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:16,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:16,528] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:16,529] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:16,529] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:16,529] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:16,529] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:16,529] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:18,270] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1_bismark_bt2_PE_report.html [2021-06-09 23:16:18,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:18,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:18,374] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:18,374] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:18,375] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:18,375] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:18,375] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:18,375] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:20,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:16:20,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:20,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:20,173] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:20,173] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:20,173] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:20,173] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:20,203] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:21,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:21,570] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:21,570] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:21,570] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:21,570] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:21,570] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:21,570] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:21,570] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:23,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:23,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:23,313] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:23,313] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:23,313] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:23,313] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:23,313] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:23,313] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:25,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:25,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:25,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:25,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:25,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:25,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:25,102] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:26,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:26,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:26,405] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:26,405] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:26,405] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:26,405] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:26,419] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:27,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_3_R1_fastqc.html [2021-06-09 23:16:27,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:27,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:27,379] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:27,379] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:27,379] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:27,379] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:27,379] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:27,379] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:29,067] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:29,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:29,069] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:29,069] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:29,069] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:29,069] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:29,100] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,395] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:16:30,396] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_7_R1_fastqc.html [2021-06-09 23:16:30,396] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_4_R1_bismark_bt2_PE_report.html [2021-06-09 23:16:30,396] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1_bismark_bt2_PE_report.html [2021-06-09 23:16:30,407] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,556] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:30,556] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:32,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_1_R1_fastqc.html [2021-06-09 23:16:32,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R1_fastqc.html [2021-06-09 23:16:32,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1_bismark_bt2_PE_report.html [2021-06-09 23:16:32,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_2_R1_bismark_bt2_pe.bam [2021-06-09 23:16:32,224] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1_bismark_bt2_PE_report.html [2021-06-09 23:16:32,306] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:32,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:32,308] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:32,308] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:32,308] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:32,308] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:32,337] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:33,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:33,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:33,577] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:33,577] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:33,577] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:33,577] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:33,595] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:34,762] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R1_bismark_bt2_pe.bam [2021-06-09 23:16:34,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:34,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:34,850] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:34,850] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:34,850] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:34,850] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:34,878] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:36,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:36,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:36,239] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:36,239] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:36,240] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:36,240] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:36,268] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:37,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:37,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:37,588] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:37,588] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:37,588] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:37,588] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:37,617] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:38,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:38,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:38,975] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:38,975] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:38,975] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:38,975] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:38,999] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,301] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,301] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,301] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,301] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,301] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:40,301] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:42,046] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:42,047] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:42,047] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:42,048] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:42,048] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:42,048] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:42,077] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:43,333] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_1_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:16:43,333] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_8_R2_fastqc.html [2021-06-09 23:16:43,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:43,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:43,450] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:43,450] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:43,450] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:43,450] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:43,450] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:43,450] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:45,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_3_R1_fastqc.html [2021-06-09 23:16:45,265] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:45,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:45,267] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:45,267] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:45,267] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:45,267] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:45,267] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:45,267] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:46,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:46,983] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:46,983] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:46,983] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:46,983] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:46,983] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:47,007] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:47,993] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_8_R1_bismark_bt2_pe.bam [2021-06-09 23:16:47,995] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_1_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:16:48,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:48,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:48,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:48,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:48,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:48,098] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:48,098] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:48,098] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:49,704] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: bismark_summary_report.html [2021-06-09 23:16:49,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:49,793] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:49,793] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:49,793] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:49,793] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:49,793] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:49,794] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:49,794] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:51,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_12_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:16:51,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_18_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:16:51,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:51,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:51,588] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:51,588] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:51,588] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:51,588] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:51,621] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:53,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_21_R1_fastqc.html [2021-06-09 23:16:53,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:53,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:53,222] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:53,222] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:53,222] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:53,222] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:53,240] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:54,616] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:54,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:54,618] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:54,618] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:54,618] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:54,618] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:54,618] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:54,618] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:57,727] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:57,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:57,728] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:57,728] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:57,728] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:57,728] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:57,729] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:57,729] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:59,441] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_9_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:16:59,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:59,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:59,536] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:59,536] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:59,536] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:59,536] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:59,536] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:16:59,537] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:01,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:01,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:01,340] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:01,341] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:01,341] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:01,341] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:01,371] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:02,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:02,749] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:02,749] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:02,750] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:02,750] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:02,750] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:02,750] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:02,750] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:04,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_10_R1_fastqc.html [2021-06-09 23:17:04,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1_bismark_bt2_PE_report.html [2021-06-09 23:17:04,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1_bismark_bt2_pe.bam [2021-06-09 23:17:04,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_13_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:17:04,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R1_bismark_bt2_pe.bam [2021-06-09 23:17:04,646] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:04,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:04,647] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:04,647] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:04,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:04,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:04,680] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:05,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_6_R1_bismark_bt2_pe.bam [2021-06-09 23:17:05,975] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_11_R2_fastqc.html [2021-06-09 23:17:06,067] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:06,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:06,069] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:06,069] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:06,069] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:06,069] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:06,069] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:06,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:07,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1_bismark_bt2_PE_report.html [2021-06-09 23:17:07,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:07,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:07,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:07,814] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:07,814] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:07,814] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:07,815] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:07,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:09,625] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:09,626] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:09,626] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:09,626] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:09,626] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:09,626] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:09,626] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:09,626] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:11,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_10_R1_bismark_bt2_pe.bam [2021-06-09 23:17:11,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:17:11,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:11,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:11,328] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:11,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:11,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:11,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:11,329] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:11,329] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:12,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_10_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:17:12,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:12,986] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:12,986] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:12,986] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:12,986] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:12,986] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:13,005] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:14,324] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:14,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:14,326] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:14,326] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:14,326] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:14,326] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:14,349] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:15,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:15,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:15,485] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:15,485] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:15,485] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:15,486] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:15,486] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:15,486] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:17,283] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:17,284] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:17,284] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:17,284] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:17,284] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:17,284] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:17,284] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:17,284] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:19,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:19,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:19,106] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:19,107] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:19,107] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:19,107] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:19,107] multiqc [DEBUG ] File ignored by 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rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:22,290] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:22,290] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:22,290] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:22,290] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:24,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1_bismark_bt2_pe.bam [2021-06-09 23:17:24,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:24,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:24,106] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:24,106] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:24,106] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:24,106] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:24,135] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:25,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:25,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:25,452] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:25,453] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:25,453] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:25,453] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:25,479] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:26,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_5_R1_bismark_bt2_PE_report.html [2021-06-09 23:17:26,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:26,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:26,748] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:26,748] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:26,748] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:26,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:26,767] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:27,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_3_R1_fastqc.html [2021-06-09 23:17:28,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:28,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:28,072] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:28,072] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:28,072] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:28,072] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:28,102] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1_fastqc.html [2021-06-09 23:17:29,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5902_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5902_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,500] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,500] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,500] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,500] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,500] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:29,501] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:31,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:31,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:31,116] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:31,116] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:31,116] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:31,116] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:31,134] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:32,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_8_R1_bismark_bt2_PE_report.html [2021-06-09 23:17:32,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:32,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:32,393] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:32,393] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:32,393] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:32,393] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:32,393] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:32,393] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:34,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:34,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:34,161] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:34,161] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:34,161] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:34,161] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:34,191] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:35,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:35,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:35,539] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:35,539] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:35,539] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:35,540] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:35,563] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:36,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:36,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:36,635] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:36,635] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:36,635] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:36,636] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:36,636] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:36,636] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:38,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:38,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:38,380] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:38,380] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:38,380] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:38,380] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:38,407] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:39,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:39,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:39,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:39,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:39,769] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:39,769] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:39,769] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:39,769] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:41,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1_bismark_bt2_pe.bam [2021-06-09 23:17:41,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_23_R1_fastqc.html [2021-06-09 23:17:41,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:41,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:41,562] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:41,562] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:41,562] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:41,562] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:41,593] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:43,065] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:43,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:43,066] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:43,066] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:43,066] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:43,067] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:43,101] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:44,663] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R1_bismark_bt2_pe.bam [2021-06-09 23:17:44,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:44,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:44,753] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:44,753] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:44,754] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:44,754] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:44,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:46,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R2_fastqc.html [2021-06-09 23:17:46,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:46,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:46,233] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:46,233] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:46,233] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:46,233] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:46,267] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:47,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:47,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:47,921] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:47,921] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:47,921] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:47,921] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:47,950] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:49,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:49,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:49,300] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:49,300] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:49,300] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:49,300] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:49,329] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:50,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_6_R1_bismark_bt2_pe.bam [2021-06-09 23:17:50,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1_fastqc.html [2021-06-09 23:17:50,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:50,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:50,707] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:50,708] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:50,708] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:50,708] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:50,708] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:50,708] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:52,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:52,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:52,451] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:52,451] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:52,451] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:52,451] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:52,470] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:53,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:53,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:53,798] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:53,798] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:53,798] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:53,798] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:53,831] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:55,476] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:55,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:55,477] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:55,477] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:55,477] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:55,478] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:55,504] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:56,750] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1_bismark_bt2_PE_report.html [2021-06-09 23:17:56,751] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1_fastqc.html [2021-06-09 23:17:56,848] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:56,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:56,850] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:56,850] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:56,850] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:56,850] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:56,850] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:56,850] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:58,645] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:58,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:58,647] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:58,647] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:58,647] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:58,647] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:58,677] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:17:59,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_6_R1_fastqc.html [2021-06-09 23:18:00,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:00,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:00,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:00,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:00,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:00,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:00,014] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:00,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:01,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:01,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:01,844] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:01,844] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:01,844] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:01,844] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:01,844] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:01,844] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:03,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:03,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:03,758] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:03,758] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:03,758] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:03,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:03,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:05,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_10_R2_fastqc.html [2021-06-09 23:18:05,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:05,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:05,091] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:05,091] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:05,091] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:05,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:05,091] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:05,092] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:06,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:06,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:06,794] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:06,794] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:06,794] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:06,794] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:06,813] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:08,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:08,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:08,112] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:08,112] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:08,112] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:08,112] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:08,112] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:08,112] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:09,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:09,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:09,930] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:09,931] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:09,931] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:09,931] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:09,931] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:09,931] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:11,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_1_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:18:11,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_2_R1_bismark_bt2_PE_report.html [2021-06-09 23:18:11,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R1_bismark_bt2_PE_report.html [2021-06-09 23:18:11,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_5_R1_bismark_bt2_pe.bam [2021-06-09 23:18:11,642] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_12_R1_fastqc.html [2021-06-09 23:18:11,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_3_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:18:11,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:11,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:11,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:11,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:11,764] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:11,764] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:11,764] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:11,764] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:13,711] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:13,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:13,713] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:13,714] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:13,714] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:13,714] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:13,714] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:13,714] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:15,489] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:18:15,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_5_R1_bismark_bt2_pe.bam [2021-06-09 23:18:15,495] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_14_R1_fastqc.html [2021-06-09 23:18:15,571] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:15,572] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:15,572] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:15,572] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:15,572] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:15,572] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:15,572] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:15,572] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:17,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:17,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:17,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:17,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:17,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:17,358] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:17,387] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:18,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_20_R1_fastqc.html [2021-06-09 23:18:18,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:18,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:18,734] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:18,734] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:18,734] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:18,734] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:18,766] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:20,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:20,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:20,050] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:20,050] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:20,051] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:20,051] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:20,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:21,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_12_R1_bismark_bt2_pe.bam [2021-06-09 23:18:21,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_13_R1_bismark_bt2_pe.bam [2021-06-09 23:18:21,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:18:21,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1_bismark_bt2_PE_report.html [2021-06-09 23:18:21,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:21,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:21,402] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:21,402] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:21,403] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:21,403] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:21,403] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:21,403] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:23,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:23,150] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:23,150] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:23,150] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:23,150] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:23,150] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:23,151] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:23,151] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:24,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1_bismark_bt2_pe.bam [2021-06-09 23:18:24,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:24,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:24,868] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:24,868] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:24,869] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:24,869] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:24,869] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:24,869] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:26,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:26,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:26,611] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:26,611] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:26,611] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:26,611] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:26,639] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:27,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:27,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:27,980] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:27,980] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:27,980] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:27,980] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:27,981] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:27,981] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:29,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:29,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:29,756] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:29,756] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:29,756] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:29,756] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:29,756] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:29,756] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:31,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:31,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:31,548] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:31,548] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:31,549] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:31,549] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:31,581] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:33,065] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:33,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:33,067] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:33,067] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:33,067] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:33,067] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:33,108] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:34,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:34,819] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:34,819] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:34,819] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:34,819] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:34,820] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:34,838] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:36,076] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_20_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:18:36,076] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1_bismark_bt2_pe.bam [2021-06-09 23:18:36,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_4_R1_fastqc.html [2021-06-09 23:18:36,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:36,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:36,170] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:36,170] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:36,170] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:36,170] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:36,200] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:37,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_12_R1_bismark_bt2_PE_report.html [2021-06-09 23:18:37,822] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:37,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:37,823] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:37,823] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:37,823] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:37,823] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:37,850] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:39,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:39,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:39,172] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:39,172] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:39,172] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:39,172] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:39,203] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:40,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_6_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:18:40,529] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:40,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:40,530] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:40,530] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:40,531] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:40,531] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:40,558] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:41,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:41,826] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:41,826] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:41,826] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:41,826] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:41,826] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:41,826] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:41,826] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:43,525] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:43,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:43,526] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:43,526] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:43,526] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:43,526] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:43,545] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:44,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:44,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:44,832] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:44,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:44,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:44,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:44,850] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:46,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:46,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:46,079] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:46,080] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:46,080] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:46,080] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:46,106] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:47,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:47,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:47,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:47,370] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:47,370] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:47,370] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:47,370] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:47,399] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:48,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:48,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:48,689] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:48,689] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:48,689] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:48,689] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:48,717] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:50,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:50,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:50,091] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:50,091] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:50,091] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:50,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:50,120] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:51,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:51,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:51,475] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:51,475] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:51,475] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:51,475] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:51,475] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:51,475] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:53,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:53,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:53,265] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:53,265] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:53,265] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:53,265] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:53,265] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:53,265] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:54,909] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_4_R1_bismark_bt2_PE_report.html [2021-06-09 23:18:54,913] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_1_R1_bismark_bt2_pe.bam [2021-06-09 23:18:54,914] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R1_fastqc.html [2021-06-09 23:18:54,914] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1_bismark_bt2_pe.bam [2021-06-09 23:18:54,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R1_bismark_bt2_PE_report.html [2021-06-09 23:18:55,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:55,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:55,019] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:55,019] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:55,019] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:55,019] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:55,019] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:55,019] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:56,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:56,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:56,696] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:56,696] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:56,696] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:56,696] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:56,716] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:58,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R1_bismark_bt2_pe.bam [2021-06-09 23:18:58,085] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:58,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:58,087] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:58,087] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:58,087] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:58,088] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:58,118] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:59,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:59,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:59,373] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:59,373] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:59,373] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:59,373] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:18:59,395] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:00,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:00,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:00,420] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:00,420] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:00,420] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:00,420] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:00,420] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:00,420] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:02,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:02,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:02,140] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:02,140] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:02,140] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:02,140] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:02,140] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:02,140] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:03,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:03,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:03,924] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:03,924] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:03,924] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:03,925] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:03,925] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:03,925] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:05,710] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:05,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:05,711] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:05,711] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:05,712] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:05,712] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:05,741] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:07,040] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:07,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:07,041] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:07,041] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:07,041] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:07,041] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:07,070] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:08,475] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:08,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:08,477] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:08,477] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:08,477] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:08,477] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:08,504] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:09,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:09,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:09,860] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:09,860] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:09,860] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:09,860] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:09,860] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:09,860] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:11,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:11,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:11,600] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:11,600] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:11,600] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:11,600] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:11,628] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:12,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_10_R1_bismark_bt2_PE_report.html [2021-06-09 23:19:12,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R1_fastqc.html [2021-06-09 23:19:12,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:19:12,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_4_R2_fastqc.html [2021-06-09 23:19:12,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:12,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:12,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:12,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:12,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:12,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:12,967] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:12,967] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:14,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_19_R1_bismark_bt2_pe.bam [2021-06-09 23:19:14,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:14,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:14,758] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:14,758] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:14,758] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:14,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:14,758] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:14,758] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:16,615] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_2_R1_bismark_bt2_pe.bam [2021-06-09 23:19:16,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:16,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:16,711] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:16,711] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:16,711] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:16,712] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:16,742] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:18,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:18,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:18,104] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:18,104] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:18,104] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:18,104] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:18,130] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:19,216] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R1_bismark_bt2_PE_report.html [2021-06-09 23:19:19,216] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_9_R2_fastqc.html [2021-06-09 23:19:19,217] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1_bismark_bt2_pe.bam [2021-06-09 23:19:19,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1_bismark_bt2_PE_report.html [2021-06-09 23:19:19,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:19,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:19,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:19,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:19,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:19,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:19,364] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:20,711] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:20,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:20,713] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:20,713] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:20,713] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:20,713] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:20,742] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:22,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:22,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:22,134] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:22,134] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:22,134] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:22,134] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:22,134] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:22,134] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:23,730] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_16_R1_fastqc.html [2021-06-09 23:19:23,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:23,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:23,753] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:23,753] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:23,753] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:23,753] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:23,772] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:25,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:25,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:25,111] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:25,111] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:25,111] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:25,111] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:25,112] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:25,112] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:26,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_19_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:19:26,843] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:19:26,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:26,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:26,929] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:26,929] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:26,930] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:26,930] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:26,958] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:28,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:28,152] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:28,152] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:28,152] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:28,152] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:28,152] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:28,152] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:28,152] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:29,840] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_17_R1_bismark_bt2_pe.bam [2021-06-09 23:19:29,841] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_5_R1_bismark_bt2_PE_report.html [2021-06-09 23:19:29,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:29,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:29,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:29,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:29,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:29,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:29,998] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:31,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:31,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:31,243] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:31,244] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:31,244] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:31,244] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:31,262] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:32,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:32,561] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:32,561] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:32,561] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:32,561] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:32,562] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:32,562] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:32,562] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:34,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:34,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:34,352] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:34,352] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:34,352] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:34,352] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:34,352] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:34,352] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:35,975] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1_bismark_bt2_pe.bam [2021-06-09 23:19:35,975] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_1_R2_fastqc.html [2021-06-09 23:19:36,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:36,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:36,125] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:36,125] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:36,125] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:36,125] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:36,125] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:36,125] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:37,835] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R2_fastqc.html [2021-06-09 23:19:37,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_3_R1_bismark_bt2_PE_report.html [2021-06-09 23:19:37,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:37,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:37,902] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:37,902] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:37,903] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:37,903] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:37,929] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:39,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_18_R2_fastqc.html [2021-06-09 23:19:39,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:39,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:39,268] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:39,268] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:39,269] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:39,269] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:39,269] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:39,269] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:40,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:40,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:40,955] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:40,955] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:40,955] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:40,955] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:40,987] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:42,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:42,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:42,645] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:42,645] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:42,645] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:42,645] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:42,677] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:44,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_6_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:19:44,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:44,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:44,295] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:44,295] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:44,295] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:44,295] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:44,322] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:45,564] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_10_R1_bismark_bt2_pe.bam [2021-06-09 23:19:45,564] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R2_fastqc.html [2021-06-09 23:19:45,565] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_20_R1_bismark_bt2_PE_report.html [2021-06-09 23:19:45,565] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_21_R2_fastqc.html [2021-06-09 23:19:45,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:45,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:45,710] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:45,710] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:45,710] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:45,710] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:45,710] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:45,710] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:47,590] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:47,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:47,591] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:47,591] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:47,591] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:47,591] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:47,591] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:47,591] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_0503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:50,613] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_1_R1_bismark_bt2_PE_report.html [2021-06-09 23:19:50,686] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:50,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:50,687] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:50,688] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:50,688] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:50,688] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:50,715] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:52,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:52,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:52,109] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:52,109] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:52,109] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:52,109] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:52,109] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:52,109] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:53,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:53,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:53,877] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:53,877] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:53,877] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:53,877] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:53,877] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:53,877] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:55,684] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:55,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:55,686] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:55,686] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:55,686] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:55,686] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:55,686] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:55,686] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:58,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_10_R2_fastqc.html [2021-06-09 23:19:58,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_8_R2_fastqc.html [2021-06-09 23:19:58,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:58,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:58,651] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:58,651] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:58,651] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:58,651] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:58,651] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:19:58,651] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:00,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:00,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:00,439] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:00,439] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:00,439] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:00,439] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:00,439] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:00,439] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:02,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1_bismark_bt2_pe.bam [2021-06-09 23:20:02,376] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:02,378] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:02,378] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:02,378] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:02,378] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:02,378] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:02,378] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:02,378] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:04,250] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:04,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:04,252] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:04,252] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:04,252] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:04,252] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:04,252] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:04,252] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:06,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:06,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:06,097] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:06,097] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:06,097] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:06,097] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:06,097] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:06,097] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:09,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_5_R1_fastqc.html [2021-06-09 23:20:09,372] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:09,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:09,373] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:09,373] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:09,373] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:09,374] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:09,374] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:09,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:11,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:11,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:11,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:11,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:11,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:11,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:11,101] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:12,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:12,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:12,417] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:12,417] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:12,417] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:12,417] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:12,446] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:13,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:13,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:13,953] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:13,953] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:13,953] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:13,953] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:13,985] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:15,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:15,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:15,305] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:15,305] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:15,305] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:15,305] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:15,334] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:16,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:16,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:16,705] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:16,705] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:16,705] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:16,705] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:16,732] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:18,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:18,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:18,061] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:18,061] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:18,061] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:18,061] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:18,061] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:18,061] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:19,850] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1_bismark_bt2_PE_report.html [2021-06-09 23:20:19,955] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:19,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:19,957] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:19,957] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:19,957] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:19,957] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:19,958] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:19,958] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:21,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:21,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:21,831] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:21,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:21,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:21,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:21,832] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:21,832] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:23,614] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1_fastqc.html [2021-06-09 23:20:23,614] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_9_R1_bismark_bt2_PE_report.html [2021-06-09 23:20:23,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:23,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:23,723] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:23,723] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:23,723] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:23,723] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:23,723] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:23,723] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:25,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_2_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:20:25,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:25,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:25,443] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:25,443] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:25,443] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:25,443] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:25,443] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:25,443] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:27,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:27,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:27,207] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:27,207] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:27,208] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:27,208] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:27,208] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:27,208] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:28,896] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0503_R1_bismark_bt2_pe.bam [2021-06-09 23:20:28,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:28,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:28,987] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:28,987] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:28,987] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:28,987] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:29,016] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:30,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:30,407] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:30,408] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:30,408] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:30,408] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:30,408] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:30,439] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:31,688] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R1_fastqc.html [2021-06-09 23:20:31,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1_bismark_bt2_PE_report.html [2021-06-09 23:20:31,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:31,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:31,744] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:31,744] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:31,744] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:31,744] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:31,762] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:32,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_7_R1_bismark_bt2_PE_report.html [2021-06-09 23:20:32,999] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:33,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:33,000] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:33,000] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:33,000] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:33,000] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:33,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:34,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:34,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:34,043] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:34,043] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:34,043] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:34,043] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:34,066] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:35,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1_bismark_bt2_pe.bam [2021-06-09 23:20:35,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:35,662] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:35,662] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:35,663] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:35,663] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:35,663] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:35,663] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:35,663] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:37,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_23_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:20:37,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_3_R2_fastqc.html [2021-06-09 23:20:37,460] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:37,461] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:37,461] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:37,461] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:37,461] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:37,462] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:37,462] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:37,462] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:39,150] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R2_fastqc.html [2021-06-09 23:20:39,150] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_13_R1_bismark_bt2_PE_report.html [2021-06-09 23:20:39,153] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1_fastqc.html [2021-06-09 23:20:39,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:39,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:39,254] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:39,254] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:39,254] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:39,254] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:39,282] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:40,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:40,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:40,610] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:40,610] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:40,610] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:40,610] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:40,611] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:40,611] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:42,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R2_fastqc.html [2021-06-09 23:20:42,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_22_R1_bismark_bt2_pe.bam [2021-06-09 23:20:42,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:42,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:42,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:42,418] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:42,418] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:42,418] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:42,418] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:42,419] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:42,446] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0502_R1_bismark_bt2_pe.bam [2021-06-09 23:20:43,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,808] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,809] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,809] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,809] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:43,810] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:45,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:45,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:45,540] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:45,540] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:45,540] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:45,540] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:45,568] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:46,851] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_5_R1_fastqc.html [2021-06-09 23:20:46,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:46,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:46,915] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:46,915] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:46,915] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:46,916] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:46,941] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_3501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,232] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,232] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,232] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,232] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,232] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:48,233] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:49,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:20:49,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_19_R2_fastqc.html [2021-06-09 23:20:49,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_9_R2_fastqc.html [2021-06-09 23:20:49,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:49,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:49,940] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:49,940] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:49,940] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:49,940] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:49,959] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:51,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:51,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:51,263] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:51,263] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:51,263] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:51,263] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:51,263] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:51,263] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:52,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_2_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:20:53,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:53,007] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:53,007] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:53,007] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:53,007] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:53,007] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:53,007] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:53,007] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:54,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_1_R1_fastqc.html [2021-06-09 23:20:54,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:54,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:54,697] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:54,697] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:54,697] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:54,697] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:54,716] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:56,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:56,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:56,056] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:56,056] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:56,056] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:56,056] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:56,056] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:56,056] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:57,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_8_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:20:57,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:57,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:57,766] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:57,766] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:57,766] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:57,766] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:57,791] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:59,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:59,048] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:59,048] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:59,048] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:59,049] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:59,049] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:59,049] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:20:59,049] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:00,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:00,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:00,801] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:00,801] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:00,801] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:00,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:00,830] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:02,043] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_8_R1_bismark_bt2_pe.bam [2021-06-09 23:21:02,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:02,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:02,129] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:02,129] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:02,129] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:02,129] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:02,129] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:02,129] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:03,765] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0502_R1_fastqc.html [2021-06-09 23:21:03,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:03,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:03,832] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:03,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:03,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:03,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:03,861] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:05,344] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:05,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:05,346] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:05,346] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:05,346] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:05,346] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:05,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:06,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:06,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:06,787] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:06,787] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:06,787] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:06,787] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:06,787] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:06,787] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:09,909] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_5_R2_fastqc.html [2021-06-09 23:21:09,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:09,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:09,968] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:09,968] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:09,968] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:09,969] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:09,969] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:09,969] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:11,978] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:11,979] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:11,980] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:11,980] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:11,980] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:11,980] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:11,980] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:11,980] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:13,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:13,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:13,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:13,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:13,769] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:13,769] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:13,798] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:15,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R1_fastqc.html [2021-06-09 23:21:15,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_8_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:21:15,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R1_bismark_bt2_pe.bam [2021-06-09 23:21:15,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1_fastqc.html [2021-06-09 23:21:15,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:15,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:15,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_16_R2_fastqc.html [2021-06-09 23:21:15,101] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_10_R1_fastqc.html [2021-06-09 23:21:15,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:15,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:15,222] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:15,222] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:15,222] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:15,222] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:15,255] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:16,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_7_R2_fastqc.html [2021-06-09 23:21:16,587] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:16,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:16,589] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:16,589] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:16,589] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:16,589] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:16,613] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:17,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_6_R2_fastqc.html [2021-06-09 23:21:17,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:17,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:17,690] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:17,691] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:17,691] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:17,691] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:17,717] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:18,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:18,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:18,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:18,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:18,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:18,991] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:19,025] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:21:20,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5903_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5903_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,622] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1_bismark_bt2_PE_report.html [2021-06-09 23:21:20,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:21:20,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,709] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,709] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,709] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,710] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,710] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:20,710] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:22,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:22,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:22,450] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:22,450] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:22,450] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:22,450] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:22,478] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:23,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:23,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:23,887] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:23,887] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:23,887] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:23,887] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:23,915] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:25,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:25,255] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:25,255] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:25,255] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:25,255] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:25,255] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:25,282] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:26,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:21:26,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:26,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:26,553] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:26,553] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:26,553] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:26,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:26,581] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:27,814] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_7_R2_fastqc.html [2021-06-09 23:21:27,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:21:27,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R2_fastqc.html [2021-06-09 23:21:27,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_14_R1_bismark_bt2_PE_report.html [2021-06-09 23:21:27,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1_bismark_bt2_pe.bam [2021-06-09 23:21:27,890] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:27,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:27,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:27,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:27,891] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:27,891] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:27,919] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:29,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:29,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:29,233] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:29,233] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:29,233] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:29,233] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:29,257] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:30,804] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_4_R1_fastqc.html [2021-06-09 23:21:30,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:30,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:30,868] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:30,868] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:30,868] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:30,868] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:30,889] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:31,810] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_9_R1_bismark_bt2_PE_report.html [2021-06-09 23:21:31,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_4_R2_fastqc.html [2021-06-09 23:21:31,893] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:31,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:31,895] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:31,895] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:31,895] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:31,895] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:31,925] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:33,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:33,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:33,354] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:33,354] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:33,354] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:33,354] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:33,381] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:34,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_18_R1_bismark_bt2_pe.bam [2021-06-09 23:21:34,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:21:34,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:34,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:34,707] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:34,707] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:34,707] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:34,707] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:34,737] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:36,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0502_R2_fastqc.html [2021-06-09 23:21:36,042] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1_bismark_bt2_PE_report.html [2021-06-09 23:21:36,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1_bismark_bt2_pe.bam [2021-06-09 23:21:36,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_23_R1_bismark_bt2_PE_report.html [2021-06-09 23:21:36,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:36,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:36,119] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:36,119] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:36,119] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:36,119] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:36,146] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:37,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:37,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:37,406] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:37,406] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:37,406] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:37,406] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:37,423] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:38,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R1_bismark_bt2_PE_report.html [2021-06-09 23:21:38,568] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:21:38,569] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_8_R1_bismark_bt2_PE_report.html [2021-06-09 23:21:38,570] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:21:38,570] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R2_fastqc.html [2021-06-09 23:21:38,655] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:38,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:38,657] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:38,657] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:38,657] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:38,657] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:38,657] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:38,657] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:40,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:40,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:40,368] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:40,368] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:40,368] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:40,368] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:40,368] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:40,368] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:42,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:42,048] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:42,048] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:42,048] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:42,048] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:42,048] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:42,068] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:43,407] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:43,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:43,409] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:43,409] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:43,409] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:43,409] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:43,443] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:45,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:45,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:45,113] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:45,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:45,115] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:45,115] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:45,115] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:45,115] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:45,138] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:46,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:46,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:46,196] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:46,196] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:46,196] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:46,196] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:46,224] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:47,481] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R2_fastqc.html [2021-06-09 23:21:47,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1_bismark_bt2_PE_report.html [2021-06-09 23:21:47,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:47,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:47,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:47,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:47,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:47,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:47,597] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:48,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:48,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:48,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:48,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:48,891] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:48,891] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:48,921] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0502_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:21:50,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_6_R2_fastqc.html [2021-06-09 23:21:50,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R2_fastqc.html [2021-06-09 23:21:50,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5902_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5902_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,312] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,312] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,312] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,312] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,312] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:50,313] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:51,987] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_7_R1_bismark_bt2_pe.bam [2021-06-09 23:21:52,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:52,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:52,078] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:52,078] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:52,079] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:52,079] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:52,079] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:52,079] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:53,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_9_R1_bismark_bt2_pe.bam [2021-06-09 23:21:53,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_4_R1_bismark_bt2_PE_report.html [2021-06-09 23:21:53,890] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:53,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:53,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:53,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:53,892] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:53,892] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:53,892] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:53,892] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:55,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:55,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:55,653] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:55,653] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:55,653] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:55,653] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:55,681] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:56,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_15_R2_fastqc.html [2021-06-09 23:21:57,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:57,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:57,069] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:57,069] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:57,069] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:57,069] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:57,069] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:21:57,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_0501_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:00,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_24_R1_bismark_bt2_PE_report.html [2021-06-09 23:22:00,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1_bismark_bt2_PE_report.html [2021-06-09 23:22:00,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:00,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:00,295] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:00,295] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:00,295] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:00,295] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:00,295] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:00,295] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:01,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_6_R2_fastqc.html [2021-06-09 23:22:02,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:02,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:02,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:02,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:02,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:02,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:02,074] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:02,074] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:03,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:22:03,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_3_R2_fastqc.html [2021-06-09 23:22:03,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_20_R2_fastqc.html [2021-06-09 23:22:03,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:03,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:03,834] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:03,834] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:03,834] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:03,834] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:03,835] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:03,835] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:05,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:05,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:05,585] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:05,585] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:05,585] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:05,585] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:05,613] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:06,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:06,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:06,861] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:06,861] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:06,861] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:06,861] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:06,880] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:08,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_5_R2_fastqc.html [2021-06-09 23:22:08,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:08,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:08,244] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:08,244] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:08,244] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:08,244] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:08,274] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:09,540] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:09,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:09,541] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:09,542] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:09,542] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:09,542] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:09,566] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:10,657] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:10,659] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:10,659] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:10,659] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:10,659] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:10,659] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:10,659] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:10,659] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:12,357] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_2_R1_bismark_bt2_PE_report.html [2021-06-09 23:22:12,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1_bismark_bt2_PE_report.html [2021-06-09 23:22:12,359] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_3_R1_bismark_bt2_pe.bam [2021-06-09 23:22:12,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:12,466] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:12,466] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:12,466] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:12,466] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:12,466] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:12,467] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:12,467] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:14,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:14,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:14,191] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:14,191] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:14,191] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:14,191] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:14,217] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:15,540] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:15,542] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:15,542] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:15,542] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:15,542] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:15,542] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:15,569] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:16,813] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_4_R2_fastqc.html [2021-06-09 23:22:16,823] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R1_bismark_bt2_PE_report.html [2021-06-09 23:22:16,919] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:16,920] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:16,921] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:16,921] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:16,921] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:16,921] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:16,921] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:16,921] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:18,646] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_3_R1_bismark_bt2_pe.bam [2021-06-09 23:22:18,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:18,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:18,721] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:18,721] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:18,721] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:18,721] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:18,750] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:20,156] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:20,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:20,158] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:20,158] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:20,158] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:20,158] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:20,187] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:21,532] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:21,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:21,533] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:21,533] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:21,533] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:21,533] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:21,533] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:21,533] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:23,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_8_R1_fastqc.html [2021-06-09 23:22:23,176] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_4_R1_bismark_bt2_pe.bam [2021-06-09 23:22:23,285] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:23,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:23,286] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:23,286] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:23,286] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:23,287] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:23,287] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:23,287] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:25,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R1_bismark_bt2_PE_report.html [2021-06-09 23:22:25,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1_fastqc.html [2021-06-09 23:22:25,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:25,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:25,108] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:25,108] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:25,108] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:25,108] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:25,108] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:25,109] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:26,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:26,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:27,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:27,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:27,075] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:27,075] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:27,075] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:27,075] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:27,108] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:28,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:28,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:28,470] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:28,470] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:28,470] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:28,470] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:28,470] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:28,470] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:30,129] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1_bismark_bt2_pe.bam [2021-06-09 23:22:30,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: job.sh [2021-06-09 23:22:30,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_9_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:22:30,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:30,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:30,273] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:30,273] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:30,273] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:30,273] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:30,273] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:30,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:32,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:32,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:32,076] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:32,076] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:32,076] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:32,076] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:32,106] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:33,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:33,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:33,538] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:33,538] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:33,538] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:33,538] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:33,570] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:34,977] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:34,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:34,978] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:34,978] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:34,978] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:34,979] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:34,979] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:34,979] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:36,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:36,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:36,801] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:36,801] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:36,801] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:36,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:36,801] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:36,801] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:38,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:38,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:38,725] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:38,725] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:38,725] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:38,725] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:38,725] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:38,725] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_3503_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:41,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:41,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:41,879] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:41,879] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:41,879] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:41,879] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:41,908] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:43,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_17_R2_fastqc.html [2021-06-09 23:22:43,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:43,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:43,326] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:43,326] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:43,326] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:43,326] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:43,355] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:44,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R1_bismark_bt2_PE_report.html [2021-06-09 23:22:44,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:44,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:44,677] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:44,678] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:44,678] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:44,678] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:44,696] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:46,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:46,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:46,029] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:46,029] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:46,030] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:46,030] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:46,030] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:46,030] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:47,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_19_R1_fastqc.html [2021-06-09 23:22:47,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:47,745] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:47,745] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:47,745] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:47,745] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:47,745] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:47,775] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:49,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:49,150] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:49,150] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:49,150] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:49,151] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:49,151] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:49,183] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:50,474] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_24_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:22:50,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:50,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:50,555] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:50,555] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:50,555] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:50,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:50,556] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:50,556] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:52,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:52,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:52,290] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:52,290] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:52,290] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:52,290] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:52,321] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:53,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:53,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:53,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:53,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:53,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:53,668] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:53,691] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:54,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1_bismark_bt2_pe.bam [2021-06-09 23:22:54,812] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:54,813] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:54,813] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:54,813] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:54,813] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:54,814] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:54,845] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,250] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5201_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,372] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,372] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,372] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,372] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,372] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:56,373] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,070] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_6_R1_bismark_bt2_PE_report.html [2021-06-09 23:22:58,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,168] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,168] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,169] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,169] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:58,169] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:59,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:59,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:59,858] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:59,858] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:59,859] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:59,859] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:22:59,878] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:01,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:01,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:01,231] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:01,231] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:01,231] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:01,231] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:01,260] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:02,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:02,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:02,552] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:02,552] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:02,552] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:02,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:02,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:03,890] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1_bismark_bt2_pe.bam [2021-06-09 23:23:03,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:03,965] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:03,965] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:03,965] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:03,965] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:03,965] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:03,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:05,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:05,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:05,325] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:05,325] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:05,325] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:05,325] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:05,350] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:06,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:06,476] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:06,476] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:06,476] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:06,476] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:06,476] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:06,476] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:06,476] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:08,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_7_R1_fastqc.html [2021-06-09 23:23:08,161] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:23:08,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:08,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:08,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:08,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:08,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:08,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:08,289] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:08,289] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:09,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_4_R1_fastqc.html [2021-06-09 23:23:10,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:10,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:10,035] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:10,035] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:10,035] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:10,035] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:10,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:11,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:11,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:11,723] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:11,723] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:11,724] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:11,724] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:11,752] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:13,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:13,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:13,078] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:13,078] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:13,079] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:13,079] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:13,106] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:14,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_17_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:23:14,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:14,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:14,451] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:14,451] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:14,451] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:14,451] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:14,479] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:15,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_14_R1_bismark_bt2_pe.bam [2021-06-09 23:23:15,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:15,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:15,798] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:15,798] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:15,799] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:15,799] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:15,799] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:15,799] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:17,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:17,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:17,465] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:17,465] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:17,465] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:17,465] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:17,491] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:18,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:18,815] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:18,815] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:18,815] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:18,815] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:18,815] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:18,816] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:18,816] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:20,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:20,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:20,622] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:20,622] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:20,622] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:20,622] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:20,622] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:20,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:22,265] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_9_R1_bismark_bt2_pe.bam [2021-06-09 23:23:22,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:22,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:22,324] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:22,324] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:22,324] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:22,324] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:22,342] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:23,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:23,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:23,559] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:23,559] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:23,559] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:23,559] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:23,586] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_24_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:24,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:24,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:24,922] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:24,922] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:24,922] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:24,922] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:24,946] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:26,068] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:26,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:26,070] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:26,070] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:26,070] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:26,070] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:26,070] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:26,070] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:27,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:27,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:27,860] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:27,860] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:27,860] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:27,860] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:27,860] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:27,860] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:29,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:29,644] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:29,644] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:29,644] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:29,644] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:29,644] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:29,669] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3616_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:30,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:30,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:30,845] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:30,845] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:30,845] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:30,845] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:30,874] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3616_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:32,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_14_R2_fastqc.html [2021-06-09 23:23:32,296] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:32,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:32,297] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:32,297] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:32,297] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:32,297] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:32,297] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:32,297] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:34,002] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R1_bismark_bt2_pe.bam [2021-06-09 23:23:34,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1_bismark_bt2_pe.bam [2021-06-09 23:23:34,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:34,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:34,117] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:34,118] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:34,118] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:34,118] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:34,147] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:35,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:35,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:35,443] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:35,443] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:35,443] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:35,443] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:35,469] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:36,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:36,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:36,726] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:36,726] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:36,726] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:36,726] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:36,726] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:36,727] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:38,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_22_R1_fastqc.html [2021-06-09 23:23:38,530] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:38,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:38,531] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:38,531] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:38,531] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:38,531] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:38,531] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:38,531] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_5901_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_3_R1_bismark_bt2_pe.bam [2021-06-09 23:23:41,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_3_R2_fastqc.html [2021-06-09 23:23:41,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,893] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,893] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,893] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,893] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,894] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,894] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:41,894] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:43,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1_bismark_bt2_pe.bam [2021-06-09 23:23:43,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R2_fastqc.html [2021-06-09 23:23:43,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:43,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:43,633] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:43,633] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:43,633] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:43,633] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:43,661] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:45,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:45,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:45,027] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:45,027] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:45,027] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:45,027] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:45,027] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:45,027] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:46,740] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_10_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:23:46,740] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R1_bismark_bt2_PE_report.html [2021-06-09 23:23:46,812] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:46,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:46,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:46,814] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:46,814] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:46,814] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:46,837] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_5_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:47,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:47,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:47,939] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:47,940] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:47,940] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:47,940] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:47,940] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:47,940] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:49,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:23:49,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:49,682] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:49,682] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:49,682] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:49,682] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:49,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:49,682] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:49,683] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:51,374] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:51,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:51,375] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:51,375] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:51,375] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:51,375] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:51,403] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_3_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:52,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:52,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:52,786] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:52,786] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:52,786] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:52,786] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:52,786] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:52,787] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_0502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:55,893] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_6_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:23:55,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:55,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:55,993] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:55,993] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:55,993] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:55,993] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:55,993] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:55,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:57,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_1_R1_fastqc.html [2021-06-09 23:23:57,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:57,788] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:57,788] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:57,788] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:57,788] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:57,789] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:57,819] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:59,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:23:59,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:59,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:59,199] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:59,199] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:59,199] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:59,199] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:23:59,227] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:00,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_9_R1_fastqc.html [2021-06-09 23:24:00,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:00,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:00,579] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:00,579] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:00,580] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:00,580] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:00,580] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:00,580] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:02,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:02,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:02,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:02,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:02,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:02,359] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:02,388] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:03,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:03,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:03,721] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:03,721] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:03,721] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:03,721] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:03,749] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:05,004] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:24:05,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:05,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:05,104] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:05,104] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:05,104] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:05,104] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:05,104] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:05,104] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:06,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_2_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:24:06,806] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5202_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:06,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5202_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:06,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_3_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:24:06,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R1_fastqc.html [2021-06-09 23:24:06,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:06,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:06,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:06,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:06,891] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:06,891] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:06,916] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:08,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:08,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:08,081] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:08,081] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:08,081] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:08,081] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:08,081] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:08,081] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_13_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:09,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:09,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:09,862] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:09,862] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:09,862] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:09,862] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:09,862] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:09,862] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:11,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:11,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:11,633] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:11,633] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:11,633] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:11,633] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:11,666] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:13,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:13,337] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:13,337] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:13,337] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:13,337] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:13,337] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:13,372] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:14,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:14,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:14,987] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:14,987] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:14,987] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:14,987] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:15,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:16,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:16,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:16,316] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:16,316] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:16,316] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:16,316] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:16,317] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:16,317] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:18,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:18,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:18,038] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:18,038] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:18,038] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:18,038] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:18,066] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:19,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R2_fastqc.html [2021-06-09 23:24:19,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:19,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:19,347] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:19,347] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:19,347] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:19,347] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:19,367] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:20,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:20,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:20,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:20,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:20,764] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:20,764] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:20,764] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:20,765] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zrtg3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:22,507] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:22,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:22,509] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:22,509] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:22,509] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:22,509] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:22,536] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:23,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:23,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:23,862] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:23,862] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:23,862] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:23,862] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:23,891] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_14_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:25,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_1_R1_bismark_bt2_PE_report.html [2021-06-09 23:24:25,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:25,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:25,242] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:25,242] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:25,242] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:25,242] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:25,242] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:25,243] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_11_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:26,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:26,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:26,993] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:26,993] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:26,993] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:26,993] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:27,023] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:28,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_11_R1_fastqc.html [2021-06-09 23:24:28,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_21_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:24:28,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:28,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:28,340] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:28,341] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:28,341] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:28,341] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:28,370] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:29,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:29,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:29,786] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:29,786] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:29,786] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:29,786] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:29,786] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:29,786] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_3502_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:32,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1_fastqc.html [2021-06-09 23:24:33,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:33,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:33,034] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_23_R1_bismark_bt2_pe.bam [2021-06-09 23:24:33,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3616_4_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:24:33,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_24_R1_bismark_bt2_pe.bam [2021-06-09 23:24:33,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:33,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:33,112] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:33,112] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:33,112] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:33,112] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:33,112] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:33,112] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:34,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:34,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:34,825] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:34,825] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:34,825] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:34,825] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:34,845] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zrtg3616_8_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:36,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:36,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:36,271] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:36,271] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:36,271] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:36,271] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:36,271] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:36,271] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:38,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:38,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:38,082] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:38,082] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:38,082] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:38,082] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:38,111] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:39,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:39,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:39,471] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:39,472] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:39,472] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:39,472] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:39,472] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:39,472] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:41,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:41,219] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:41,219] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:41,219] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:41,220] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:41,220] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:41,246] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zrtg3644_12_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:42,592] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_12_R2_fastqc.html [2021-06-09 23:24:42,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R1_fastqc.html [2021-06-09 23:24:42,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_9_R1_fastqc.html [2021-06-09 23:24:42,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1_bismark_bt2_PE_report.html [2021-06-09 23:24:42,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:42,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:42,756] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:42,756] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:42,756] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:42,756] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:42,793] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:44,501] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:44,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:44,503] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:44,503] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:44,503] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:44,503] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:44,527] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:45,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1_bismark_bt2_pe.bam [2021-06-09 23:24:45,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1_fastqc.html [2021-06-09 23:24:45,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_6_R1_bismark_bt2_PE_report.html [2021-06-09 23:24:45,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:45,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:45,594] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:45,594] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:45,594] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:45,594] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:45,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:46,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:46,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:46,895] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:46,895] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:46,896] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:46,896] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:46,896] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:46,896] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:48,655] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:48,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:48,657] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:48,657] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:48,657] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:48,657] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:48,683] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:49,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:49,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:49,994] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:49,994] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:49,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:49,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:49,995] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:49,995] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zrtg3644_2_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:51,808] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:51,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:51,810] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:51,810] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:51,810] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:51,810] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:51,810] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:51,810] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:53,565] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R1_bismark_bt2_PE_report.html [2021-06-09 23:24:53,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:53,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:53,651] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:53,651] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:53,651] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:53,651] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:53,680] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_20_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:55,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:55,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:55,002] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:55,002] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:55,003] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:55,003] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:55,031] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zrtg3644_19_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:56,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:56,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:56,335] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:56,335] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:56,335] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:56,335] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:56,336] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:56,336] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:58,002] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_4_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:24:58,004] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_7_R1_bismark_bt2_pe.bam [2021-06-09 23:24:58,004] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_2_R1_fastqc.html [2021-06-09 23:24:58,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:58,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:58,082] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:58,082] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:58,082] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:58,082] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:58,110] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:59,396] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:59,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:59,397] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:59,398] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:59,398] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:59,398] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:59,398] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:24:59,398] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:01,020] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_15_R1_bismark_bt2_pe.deduplicated.bam [2021-06-09 23:25:01,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:01,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:01,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:01,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:01,090] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:01,090] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:01,123] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zrtg3644_10_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:02,406] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zrtg3644_4_R1_bismark_bt2_pe.bam [2021-06-09 23:25:02,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:02,502] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:02,502] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:02,502] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:02,502] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:02,502] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:02,502] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:02,502] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:04,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:04,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:04,271] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:04,271] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:04,271] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:04,271] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:04,297] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zrtg3616_1_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:05,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:05,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:05,560] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:05,561] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:05,561] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:05,561] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:05,561] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:05,561] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_5203_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:08,696] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:08,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:08,698] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:08,698] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:08,698] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:08,698] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:08,728] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:10,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:10,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:10,027] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:10,027] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:10,027] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:10,027] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:10,054] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:11,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:11,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:11,381] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:11,382] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:11,382] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:11,382] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:11,411] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1_bismark_bt2_pe.deduplicated.txt [2021-06-09 23:25:12,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1_fastqc.html [2021-06-09 23:25:12,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1_bismark_bt2_PE_report.html [2021-06-09 23:25:12,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1_fastqc.html [2021-06-09 23:25:15,681] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-06-09 23:25:15,723] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-06-09 23:25:15,726] multiqc [DEBUG ] No samples found: custom_content [2021-06-09 23:25:15,736] multiqc [DEBUG ] No samples found: conpair [2021-06-09 23:25:15,771] multiqc [DEBUG ] No samples found: peddy [2021-06-09 23:25:15,800] multiqc [DEBUG ] No samples found: methylQA [2021-06-09 23:25:15,808] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-06-09 23:25:15,855] multiqc [DEBUG ] No samples found: qualimap [2021-06-09 23:25:15,875] multiqc [DEBUG ] No samples found: preseq [2021-06-09 23:25:15,888] multiqc [DEBUG ] No samples found: quast [2021-06-09 23:25:15,904] multiqc [DEBUG ] No samples found: qorts [2021-06-09 23:25:15,929] multiqc [DEBUG ] No samples found: rna_seqc [2021-06-09 23:25:15,948] multiqc [DEBUG ] No samples found: rsem [2021-06-09 23:25:15,972] multiqc [DEBUG ] No samples found: rseqc [2021-06-09 23:25:15,978] multiqc [DEBUG ] No samples found: busco [2021-06-09 23:25:16,004] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-06-09 23:25:16,010] multiqc [DEBUG ] No samples found: disambiguate [2021-06-09 23:25:16,028] multiqc [DEBUG ] No samples found: supernova [2021-06-09 23:25:16,137] multiqc [DEBUG ] No samples found: deeptools [2021-06-09 23:25:16,162] multiqc [DEBUG ] No samples found: sargasso [2021-06-09 23:25:16,180] multiqc [DEBUG ] No samples found: verifybamid [2021-06-09 23:25:16,219] multiqc [DEBUG ] No samples found: mirtrace [2021-06-09 23:25:16,253] multiqc [DEBUG ] No samples found: happy [2021-06-09 23:25:16,291] multiqc [DEBUG ] No samples found: homer [2021-06-09 23:25:16,316] multiqc [DEBUG ] No samples found: macs2 [2021-06-09 23:25:16,323] multiqc [DEBUG ] No samples found: theta2 [2021-06-09 23:25:16,341] multiqc [DEBUG ] No samples found: snpeff [2021-06-09 23:25:16,387] multiqc [DEBUG ] No samples found: gatk [2021-06-09 23:25:16,396] multiqc [DEBUG ] No samples found: htseq [2021-06-09 23:25:16,418] multiqc [DEBUG ] No samples found: bcftools [2021-06-09 23:25:16,426] multiqc [DEBUG ] No samples found: featureCounts [2021-06-09 23:25:16,434] multiqc [DEBUG ] No samples found: fgbio [2021-06-09 23:25:16,442] multiqc [DEBUG ] No samples found: dedup [2021-06-09 23:25:16,452] multiqc [DEBUG ] No samples found: damageprofiler [2021-06-09 23:25:16,604] multiqc [DEBUG ] No samples found: biobambam2 [2021-06-09 23:25:16,611] multiqc [DEBUG ] No samples found: mtnucratio [2021-06-09 23:25:16,614] multiqc [DEBUG ] No samples found: picard [2021-06-09 23:25:16,630] multiqc [DEBUG ] No samples found: prokka [2021-06-09 23:25:16,637] multiqc [DEBUG ] No samples found: samblaster [2021-06-09 23:25:16,716] multiqc [DEBUG ] No samples found: samtools [2021-06-09 23:25:16,728] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-06-09 23:25:16,735] multiqc [DEBUG ] No samples found: bamtools [2021-06-09 23:25:16,742] multiqc [DEBUG ] No samples found: jellyfish [2021-06-09 23:25:16,753] multiqc [DEBUG ] No samples found: vcftools [2021-06-09 23:25:16,773] multiqc [DEBUG ] No samples found: longranger [2021-06-09 23:25:16,817] multiqc [DEBUG ] No samples found: stacks [2021-06-09 23:25:16,873] multiqc [DEBUG ] No samples found: bbmap [2021-06-09 23:25:18,069] multiqc.modules.bismark.bismark [INFO ] Found 78 bismark alignment reports [2021-06-09 23:25:18,119] multiqc.modules.bismark.bismark [INFO ] Found 78 bismark dedup reports [2021-06-09 23:25:18,122] multiqc.modules.bismark.bismark [INFO ] Found 78 bismark methextract reports [2021-06-09 23:25:18,313] multiqc [DEBUG ] No samples found: biscuit [2021-06-09 23:25:18,332] multiqc [DEBUG ] No samples found: hicexplorer [2021-06-09 23:25:18,361] multiqc [DEBUG ] No samples found: hicup [2021-06-09 23:25:18,392] multiqc [DEBUG ] No samples found: hicpro [2021-06-09 23:25:18,402] multiqc [DEBUG ] No samples found: salmon [2021-06-09 23:25:18,441] multiqc [DEBUG ] No samples found: kallisto [2021-06-09 23:25:18,463] multiqc [DEBUG ] No samples found: slamdunk [2021-06-09 23:25:18,495] multiqc [DEBUG ] No samples found: star [2021-06-09 23:25:18,519] multiqc [DEBUG ] No samples found: hisat2 [2021-06-09 23:25:18,541] multiqc [DEBUG ] No samples found: tophat [2021-06-09 23:25:18,581] multiqc [DEBUG ] No samples found: bowtie2 [2021-06-09 23:25:18,608] multiqc [DEBUG ] No samples found: bowtie1 [2021-06-09 23:25:18,617] multiqc [DEBUG ] No samples found: kat [2021-06-09 23:25:18,626] multiqc [DEBUG ] No samples found: leehom [2021-06-09 23:25:18,649] multiqc [DEBUG ] No samples found: adapterRemoval [2021-06-09 23:25:18,657] multiqc [DEBUG ] No samples found: clipandmerge [2021-06-09 23:25:18,685] multiqc [DEBUG ] No samples found: cutadapt [2021-06-09 23:25:18,693] multiqc [DEBUG ] No samples found: flexbar [2021-06-09 23:25:18,712] multiqc [DEBUG ] No samples found: trimmomatic [2021-06-09 23:25:18,743] multiqc [DEBUG ] No samples found: skewer [2021-06-09 23:25:18,751] multiqc [DEBUG ] No samples found: sortmerna [2021-06-09 23:25:18,758] multiqc [DEBUG ] No samples found: biobloomtools [2021-06-09 23:25:18,790] multiqc [DEBUG ] No samples found: fastq_screen [2021-06-09 23:25:18,811] multiqc [DEBUG ] No samples found: afterqc [2021-06-09 23:25:18,834] multiqc [DEBUG ] No samples found: fastp [2021-06-09 23:26:05,648] multiqc.modules.fastqc.fastqc [INFO ] Found 156 reports [2021-06-09 23:26:16,149] multiqc [DEBUG ] No samples found: minionqc [2021-06-09 23:26:16,167] multiqc [DEBUG ] No samples found: mosdepth [2021-06-09 23:26:16,187] multiqc [DEBUG ] No samples found: clusterflow [2021-06-09 23:26:16,220] multiqc [DEBUG ] No samples found: bcl2fastq [2021-06-09 23:26:16,236] multiqc [DEBUG ] No samples found: interop [2021-06-09 23:26:16,251] multiqc [DEBUG ] No samples found: flash [2021-06-09 23:26:16,278] multiqc [DEBUG ] No samples found: seqyclean [2021-06-09 23:26:16,714] multiqc [INFO ] Compressing plot data [2021-06-09 23:26:17,748] multiqc [INFO ] Report : multiqc_report.html [2021-06-09 23:26:17,748] multiqc [INFO ] Data : multiqc_data [2021-06-09 23:26:17,751] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,751] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/multiqc_bismark_alignment.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,765] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/multiqc_bismark_dedup.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,766] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/multiqc_bismark_methextract.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,767] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,768] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/mqc_fastqc_sequence_counts_plot_1.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,768] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,770] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,771] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,772] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,773] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,774] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/mqc_fastqc_sequence_length_distribution_plot_1.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,775] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,776] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,776] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:17,777] multiqc [DEBUG ] Moving data file from '/tmp/tmppbtgphv4/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/sr320/060921-bigC/multiqc_data' [2021-06-09 23:26:18,482] multiqc [INFO ] MultiQC complete