5902_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 57479 lines in total Total number of methylation call strings processed: 114958 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1978606 Total methylated C's in CpG context: 28775 Total methylated C's in CHG context: 3057 Total methylated C's in CHH context: 13217 Total C to T conversions in CpG context: 207515 Total C to T conversions in CHG context: 321019 Total C to T conversions in CHH context: 1405023 C methylated in CpG context: 12.2% C methylated in CHG context: 0.9% C methylated in CHH context: 0.9%